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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTGGCGCGGGCGCCGCCGCCGCGTCGGCTCCTCGCCGCTGCGCCAACTGCGACACGACCTCCACGCCGCTCTGGCGGAACGGCCCACGCGGACCAAAGgtactgtccattgcctacaaaagcacactgatcataacatacataattacacaaacacgtataagctaatgcaatgtgctcgcgtacacaagcagcatacacgcattctcctgcatgtgtgatcgattcgatgctaaacgtatgcgtgatctgcttttcag

Basic information

species Oryza sativa
transcript LOC_Os01g47360.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g47360.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G123909_T01 (Zea mays), 5'ss of exon 1
-CGGTGGCGCGGGCGCCGCCGCCGCGTCGGCTCCTCGCCGCTGCGCCAACTGCGACACGACCTCCACGCCGCTCTGGCGGAACGGCCCACGCGGACCAAAGgtactgtccattgcctacaaaagcacactgatcataacatacataattacacaaacacgtataagctaatgca-----atgtgctcgc----gtacacaagcagcatacacgcattctcctgcatgtgtgat-cgattcgatgctaaacgtatgcgtgatctgcttttcag
 | |  |   | |||| | ||||| | |||   ||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||| |||||||    | |  | | |    ||         ||  ||| ||     |  ||  ||  |     |||   ||     |   ||||||    |  |  || |    ||  ||  |   | | ||| |    | ||||  | ||||    | |                   
GCAGCAGGAGGCGCGC-GGCGCCGAGGCGGGCGCTCGCCGCTGCGCCAACTGCGACACCACCTCCACGCCGCTCTGGAGGAACGGGCCGCGCGGACCCAAGgtacgtaacgtgacgtgcgtgggccgcgaagcgatgccatgcaatgcaatgcatgcatttcgttactagcacacacacacacgctcgctgtcgatcctaatcgaagtaagcgactaagcgtacatatccatttcgatctgttgctgcgtgcag------------------