1 5' 3' |
GCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGgcgtcgacccagctggcgggactgtacgaggtgacggccttcttctacgccaccgcgggcgccggcggcgtgccggcgccgttcatggtgcggaaccggg...
species | Oryza sativa |
transcript | LOC_Os01g46370.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAG GGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTGEST: gi|89169941|gb|CI039218.1|CI039218
genomic: ACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGgcgtcgaccc ... cggggcgcagGGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTG
EST: ACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAG GGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTGGAGCTGGTG
genomic: ACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGgcgtcgaccc ... cggggcgcagGGCAAGCGCGGCGGGTTCAAGCTGGAGGTCGACCGGGACGTGGCGCTGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGCGCAGGCCACCAACGACGCGTTCATCCGCGAGGCGTGGTCGCCGCACGCCGGCGCGTGCCGGTACAGCCGCGACAGGTTCTTGGAGAAGGCGCAGgcgtcgacccagctggcgggactgtacgaggtgacggccttcttctacgccaccgcgggcgccggcggcgtgccggcgccgttcatggtgcggaaccggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgcgg