1 5' 3' |
GGTGGACCTGGACAGGGCGGACTCCGCGACGCTGGACGAGCTCGACCGGATGGTCGCGGAGCACGGGGCCGCCCTCGCCGGCGTGGTTAAGGTGAAGCAGgtaacatctggcagtgtgcttttgctcttaatcctgctctttagcatttcagtgaaccccctggaatctgtactcatcgcgtctgtttatagcgtagcaa...
species | Oryza sativa |
transcript | LOC_Os01g46040.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGTC-CGGAGCAC-GGGCCGCCCTCGCCGGCGTGGTTAAGGTGAAGCAG GAGCCATGAGTGGTGGATAATCAAATTTCAGAAGGTCCTGCAAGATTCTACEST: gi|88243873|gb|CI242995.1|CI242995
genomic: TGGTCGCGGAGCACGGGGCCGCCCTCGCCGGCGTGGTTAAGGTGAAGCAGgtaacatctg ... tgaactgtagGAGCCATGAGTGGTGGATAATCAAATTTCAGAAGGTCCTGCAAGATTCTAC
EST: TGGCCGCGGAGCACGGGGCCGCCCTCGCCGGCGTGGTTAAGGTGAAGCAG GAGCCATGAGTGGTGGATAATCAAATTTCAGAAGGTCCTGCAAGATTCTAC
genomic: TGGTCGCGGAGCACGGGGCCGCCCTCGCCGGCGTGGTTAAGGTGAAGCAGgtaacatctg ... tgaactgtagGAGCCATGAGTGGTGGATAATCAAATTTCAGAAGGTCCTGCAAGATTCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGACCTGGACAGGGCGGACTCCGCGACGCTGGACGAGCTCGACCGGATGGTCGCGGAGCACGGGGCCGCCCTCGCCGGCGTGGTTAAGGTGAAGCAGgtaacatctggcagtgtgcttttgctcttaatcctgctctttagcatttcagtgaaccccctggaatctgtactcatcgcgtctgtttatagcgtagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccctg