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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACACAATTCATCTCTACCTCCTGACTCTTTATAAGGACCCCCAGCATCACCACAATTGCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacctctttgatctttaagccgttgttatgttctatttctgagcatatggtttctagttatattctttttcttcattcgtttcatatctttgaag...

Basic information

species Oryza sativa
transcript LOC_Os01g44220.6
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88586431|gb|CI704132.1|CI704132
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88468807|gb|CI696804.1|CI696804
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88436588|gb|CI691316.1|CI691316
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88731555|gb|CI755168.1|CI755168
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88590335|gb|CI709181.1|CI709181
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88592687|gb|CI710808.1|CI710808
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|1632029|gb|C19758.1|C19758
EST:     ATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: ATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|95101426|gb|CI693174.1|CI693174
EST:     ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: ACAAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88442845|gb|CI694249.1|CI694249
EST:     GCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: GCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88404910|gb|CI685344.1|CI685344
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|1631746|gb|C19475.1|C19475
EST:     GGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: GGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88586455|gb|CI704156.1|CI704156
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88591618|gb|CI709663.1|CI709663
EST:     ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: ACAAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88721115|gb|CI744414.1|CI744414
EST:     AGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88370002|gb|CI680684.1|CI680684
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88578726|gb|CI687673.1|CI687673
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88424033|gb|CI689732.1|CI689732
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88310654|gb|CI672515.1|CI672515
EST:     ATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: ATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88313641|gb|CI671770.1|CI671770
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88313443|gb|CI671561.1|CI671561
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88722100|gb|CI745427.1|CI745427
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88432620|gb|CI690457.1|CI690457
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88724277|gb|CI747536.1|CI747536
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88724785|gb|CI748044.1|CI748044
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88959416|gb|CI685897.1|CI685897
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88332311|gb|CI656180.1|CI656180
EST:     ACCACAATTGCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: ACCACAATTGCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88379094|gb|CI681927.1|CI681927
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88959057|gb|CI685793.1|CI685793
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88587937|gb|CI705720.1|CI705720
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88434668|gb|CI690949.1|CI690949
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88721785|gb|CI745084.1|CI745084
EST:     AGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88580165|gb|CI692165.1|CI692165
EST:     GCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: GCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88722340|gb|CI745850.1|CI745850
EST:     AGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88583752|gb|CI701256.1|CI701256
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|95101358|gb|CI693106.1|CI693106
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88581775|gb|CI698981.1|CI698981
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88581823|gb|CI699034.1|CI699034
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88310738|gb|CI672605.1|CI672605
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88334475|gb|CI676249.1|CI676249
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88578267|gb|CI687187.1|CI687187
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88695447|gb|CI737485.1|CI737485
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88579965|gb|CI691962.1|CI691962
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88722803|gb|CI746313.1|CI746313
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88727392|gb|CI751047.1|CI751047
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88394230|gb|CI684905.1|CI684905
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88369721|gb|CI680389.1|CI680389
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88590748|gb|CI707632.1|CI707632
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88851990|gb|CI679548.1|CI679548
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88587639|gb|CI704346.1|CI704346
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88587485|gb|CI705235.1|CI705235
EST:     AAGTACAGGCATTACATCCACAACAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88321573|gb|CI672705.1|CI672705
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88583741|gb|CI701244.1|CI701244
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88587225|gb|CI704961.1|CI704961
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88378739|gb|CI681555.1|CI681555
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88388472|gb|CI683249.1|CI683249
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88731649|gb|CI755262.1|CI755262
EST:     ATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: ATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88726134|gb|CI749789.1|CI749789
EST:     AAGTGCAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88580761|gb|CI697711.1|CI697711
EST:     ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: ACAAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88580407|gb|CI697335.1|CI697335
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88696334|gb|CI739909.1|CI739909
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88306534|gb|CI671286.1|CI671286
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88576805|gb|CI673331.1|CI673331
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88590896|gb|CI707792.1|CI707792
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88695102|gb|CI739140.1|CI739140
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88721198|gb|CI744497.1|CI744497
EST:     GTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: GTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88386743|gb|CI682897.1|CI682897
EST:     ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: ACAAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|95101434|gb|CI693182.1|CI693182
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88581614|gb|CI698814.1|CI698814
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88587959|gb|CI705743.1|CI705743
EST:     GCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: GCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88369747|gb|CI680418.1|CI680418
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88321531|gb|CI672660.1|CI672660
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88382690|gb|CI682579.1|CI682579
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88719588|gb|CI743098.1|CI743098
EST:     ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88451782|gb|CI694552.1|CI694552
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88726224|gb|CI749879.1|CI749879
EST:     AGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88591313|gb|CI708238.1|CI708238
EST:     ACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: ACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88391923|gb|CI683741.1|CI683741
EST:     CATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: CATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88359940|gb|CI679709.1|CI679709
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88718649|gb|CI742159.1|CI742159
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|95101252|gb|CI692993.1|CI692993
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88467402|gb|CI696785.1|CI696785
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88695626|gb|CI737664.1|CI737664
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88722816|gb|CI746326.1|CI746326
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88371876|gb|CI681387.1|CI681387
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88587570|gb|CI705326.1|CI705326
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88461692|gb|CI695535.1|CI695535
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGTTGCAG                    
genomic: AAGTACAGGCATTAGATCCACAAGAACACTT--G--G--GCAGgcaagcacct ... ttagt
EST: gi|88331522|gb|CI675859.1|CI675859
EST:     ACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: ACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88463678|gb|CI696154.1|CI696154
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88728671|gb|CI752181.1|CI752181
EST:     TACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: TACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88582923|gb|CI699388.1|CI699388
EST:     ATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: ATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88591296|gb|CI708221.1|CI708221
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88730612|gb|CI754225.1|CI754225
EST:     ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: ACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88586909|gb|CI704630.1|CI704630
EST:     GCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: GCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
EST: gi|88361961|gb|CI682139.1|CI682139
EST:     AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAG                         GTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG
genomic: AAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 60 (upstream exon), 75 (downstream exon)
Score: 390

TCACACAATTCATCTCTACCTCCTGACTCTTTATAAGGACCCCCAGCATCACCACAATTGCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacct ... ttagttgcagGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTGGATACGAATGCTTGTGCACAACCAATGAGAAGGGCTGGTGAGGGTGCTGGGACTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACACAATTCATCTCTACCTCCTGACTCTTTATAAGGACCCCCAGCATCACCACAATTGCACAAGTACAGGCATTAGATCCACAAGAACACTTGGGCAGgcaagcacctctttgatctttaagccgttgttatgttctatttctgagcatatggtttctagttatattctttttcttcattcgtttcatatctttgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC