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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCTTTCAAATTTCCTTTTCTTTATCCTATATAAAGGATAGAGAAGGCGTATGCCTAGGTGCACCAACCCTGAAAGTTTTATTCTAATTGCGGGAATGgtttgtaatttttgcttgttcaggttctttttcgtggcctttcttttttttccccttattttgcttagtctttcacagtccaatttttgggaagtagtat...

Basic information

species Oryza sativa
transcript LOC_Os01g44220.5
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88361870|gb|CI682040.1|CI682040
EST:     GTATGCCTAGGTGCACCAACCCTGAAAGTTTTATTCTAATTGCGGGAATG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: GTATGCCTAGGTGCACCAACCCTGAAAGTTTTATTCTAATTGCGGGAATGgtttgtaatt ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
EST: gi|88588661|gb|CI706497.1|CI706497
EST:     GTATGCCTAGGTGCACCAACCCTGAAAGTTTTATTCTAATTGCGGGAATG                         TTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG
genomic: GTATGCCTAGGTGCACCAACCCTGAAAGTTTTATTCTAATTGCGGGAATGgtttgtaatt ... atttttttagTTGCAGGTTTGTCTGGGACTTTGAGTACCCATGCAATTCATGATGCCATTG