1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCCAGTGGGTGCGTTTGTGCGAGACTTGAGGCTGAGCGAGAGGGGAGGAGAGATCGTGCTCCGCGAGGGAACGGCGGCGAGGAGCTGGGTGCATCTCGGgtacgtgcctcctctctctctctctcctcgcgtcgctcgagctctgctttggacgggggatttccggagctcgatttcctgctcgggctcgactctctgt...
species | Oryza sativa |
transcript | LOC_Os01g43870.6 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGATCGTGCTCCGCGAGGGAACGGCGGCGAGGAGCTGGGTGCATCTCGG TTGGACTTTTCCTACTGGAACTGCAGTACTTTCAACCATGCTTTTTGCAAAEST: gi|88364965|gb|CI616384.1|CI616384
genomic: GAGATCGTGCTCCGCGAGGGAACGGCGGCGAGGAGCTGGGTGCATCTCGGgtacgtgcct ... gtttcaacagTTGGACTTTTCCTACTGGAACTGCAGTACTTTCAA-CATGCTTTTTGCAAA
EST: GAGATCGTGCTCCGCGAGGGAACGGCGGCGAGGAGCTGGGTGCATCTCGG TTGGACTTTTCCTACTGGAACTGCAGTACTTTCAACATGCTTTTTGCAAATEST: gi|88347839|gb|CI635932.1|CI635932
genomic: GAGATCGTGCTCCGCGAGGGAACGGCGGCGAGGAGCTGGGTGCATCTCGGgtacgtgcct ... gtttcaacagTTGGACTTTTCCTACTGGAACTGCAGTACTTTCAACATGCTTTTTGCAAAT
EST: GAGATCGTGCTCCGCGAGGGAACGGCGGCGAGGAGCTGGGTGCATCTCGG TTGGACTTTTCCTACTGGAACTGCAGTACTTTCAACATGCTTTTTGCAAATEST: gi|88390836|gb|CI611062.1|CI611062
genomic: GAGATCGTGCTCCGCGAGGGAACGGCGGCGAGGAGCTGGGTGCATCTCGGgtacgtgcct ... gtttcaacagTTGGACTTTTCCTACTGGAACTGCAGTACTTTCAACATGCTTTTTGCAAAT
EST: GAGATCGTGCTCCGCGAGGGAACGGGGGCGAGGAGCTGGGTGCATCTCGG TTGGACTTTTCCTACTGGAACTGCAGTACTTTCAACATGCTTTTTGCAAAT
genomic: GAGATCGTGCTCCGCGAGGGAACGGCGGCGAGGAGCTGGGTGCATCTCGGgtacgtgcct ... gtttcaacagTTGGACTTTTCCTACTGGAACTGCAGTACTTTCAACATGCTTTTTGCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCAGTGGGTGCGTTTGTGCGAGACTTGAGGCTGAGCGAGAGGGGAGGAGAGATCGTGCTCCGCGAGGGAACGGCGGCGAGGAGCTGGGTGCATCTCGGgtacgtgcctcctctctctctctctcctcgcgtcgctcgagctctgctttggacgggggatttccggagctcgatttcctgctcgggctcgactctctgt
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacgggg