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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCCGCCCGCCGTCGCCGTCGTGAGCGCCGCCAAAGCGATGCGCCTTGCCTCCCGCGCCTCTCTACGCCGCGCCGCCGCCATGTCCGCTTACTACAACgtacgcccgcccgcccatctcccctcgtggattgctcccccgaatcccccatccttcctcgcctctagagtctaaaccctccccatctcctcaatctctctctcttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g42490.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g42490.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G034430_T01 (Zea mays), 5'ss of exon 1
GCCGCCGCCCGCCGTCGCCGTCGTGAGCGCCGCCAAAGCGATGCGCCTTGCCTCCCGCGCCTCTCTACGCCGCGCCGCCGCCATGTCCGCTTACTACAACgtacgcccgcccgcccatctcccctcgtggattgctcccccgaatcccccatccttcctcgcctctagagtctaaaccctccccatctcctcaatctctctctcttgcag
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GCCTCCGCC-GCCGCCGCCGCCGTGAACG-----AGAGTGATGCGCCTCGCGTCCTATGCCTTTCTACGCCGCGCCGCCGCCATGTCCTCCCCCTCC----TCCTACAGCgtacgcctccctcctgattcatcacctccactcgtgacatccctctctcaatctgtcgcgtctaaaccatctctcttacctttacctttacct--tgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88730799|gb|CI754412.1|CI754412
EST:     CCTCCCGCGCCTCTCTACGCCGCGCCGCCGCCATGTCCGCTTACTACAAC                         GCCCGAGGATCCGCTCGCCCGCGACGAGGCTACTACTCCGGGCGACCCACG
genomic: CCTCCCGCGCCTCTCTACGCCGCGCCGCCGCCATGTCCGCTTACTACAACgtacgcccgc ... tctcttgcagGCCCGAGGATCCGCTCGCCCGCGACGAGGCTACTACTCCGGGCGACCCACG