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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGGTGGGGGCGCTTCTAGGGTTTGGTGGGGTTCGGGCGGGCGCGCCGCCGTGTTTGGGGTAGCCATGTCGCAGACGAACTGGGAGGCGGATAAGATgtgaggatttgtgttttccctctccttgttcccgtggattcacgccgtgttttgctgggaggtggagtttttttttttttttgctgcgtctggggggcgg...

Basic information

species Oryza sativa
transcript LOC_Os01g42260.4
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g42260.4 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G022383_T01 (Zea mays), 5'ss of exon 1
--GTGGGGGTGGGGGCGCTTCTAGGGTTTGGTGGGGTTCGGGCGGGCGCGCCGCCGTGTTTGGGGTAGCCATGTCGCAGACGAACTGGGAGGCGGATAAGATgtgaggatttgtgttttccctctccttgttcccgtggattcacgccgtgttttgctgggaggtggagtttttttttttttttgctgcgtctggggggcgg-----------
  || ||||       |||||   ||    | ||  | | |   |||||||||        |     |||||||||||||| |||||||||||||| ||||||| |||||||| |||| || |       ||| | ||  | || |  || | || ||| |     | |||| |  |||  || |||  | |||| | |              
TCGTCGGGGCTTTTTTGCTTCGGAGGG--AGAGGCTTCCTGTTCGGCGCGCCGTGAGAAGAGCACCGGCCATGTCGCAGACTAACTGGGAGGCGGACAAGATgtaaggatttg-gtttaccat-------ttcacatgactacatga-gtatctttctgtgcac--gtgtttatcgtttggttcgcttgggctggcgtgattttgcgtctttt