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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAGGATGATGCAGGGATCGTCGTACTACGCCGTGCTCGGCGTTCACCCCGGCGCGTCCGCCGCCGAGATACGCGCCGCGTACCACCGCCTCGCCATGgtgagtgcgattctgcaacacacccggtctggttttcctgtggtttggtttcgccggagttggaagcagagcatctgagcatatatggcgctgacgtgatttgggatttggtgcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g42190.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g42190.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G023786_T01 (Zea mays), 5'ss of exon 1
GAGGAGGATGATGCAGGGATCGTCGTACTACGCCGTGCTCGGCGTTCACCCCGGCGCGTCCGCCGCCGAGATACGCGCCGCGTACCACCGCCTCGCCATGgtgagtgcgattctgcaacac--acccggtctggttttcctgtggtttggtttcgccggagttggaagcagagcatctgagcatatatggcgctga--cgtgatttgggatttggtgcgtgcag------
|| |  |  |   ||  |   |||||||||||| ||||||||||| || || |||||  ||||||||||||| |||||||| |||||||||||||||||||||||| |     | |   ||  |||   ||        | ||         ||||    || | |   |   |||  |  |   | |||        |||||  |    ||        |  |      
GATGCAGGCGCATCACCGTCAGTCGTACTACGCGGTGCTCGGCGTGCAGCCGGGCGCCACCGCCGCCGAGATCCGCGCCGCCTACCACCGCCTCGCCATGgtgagtacttgagtaccgtaccgaccgactccctgcagtcggtaacaaacaatcgctttggt-gtatatatgccattggcccgcgtgtggaaacagatcgtgacatatacttcctctgacggcgacgcag