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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATCTCCCCGGACGCGGCTCGCAACGTCGTCGGCATCATCGGCAATGTCATCTCCTTCGGCCTCTTCCTCGCCCCCGTgtaattaagttcttctaatcaagccgatcgatcgaccatctctctctgcatgcaggataggatacaatacaacaaattctgaaattcatttctggttgtgtgtatatatgtatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g42110.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g42110.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G416965_T01 (Zea mays), 5'ss of exon 2
ATGATCTCCCCGGACGCGGCTCGCAACGTCGTCGGCATCATCGGCAATGTCATCTCCTTCGGCCTCTTCCTCGCCCCCGTgtaattaagttcttctaatcaagccgatcgatcgaccatctctctctgcatgcaggataggatacaatacaacaaattctgaaattcatttctggttgtgtgtatatatgtatgcag
                                           |||||||||||||||| |||||||||||| |||| ||||||  | |      |      ||   ||||    | | |    |     |      | || ||   |        | ||||     |   | |    ||  | | ||  | |||||
-------------------------------------------GCAATGTCATCTCCTTTGGCCTCTTCCTCTCCCCAGTgtaagcacggatcgatccctccgcgtttcgacgagcgagcctggt---ggttttaatttggttagggttttgtttgtgctgacggagagg-cggcgcatgcatttttacctgtgcag

upper sequence: LOC_Os01g42110.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G157675_T02 (Zea mays), 5'ss of exon 1
---------------------ATGATCTCCCCGGACGCGGCTCGCAACGTCGTCGGCATCATCGGCAATGTCATCTCCTTCGGCCTCTTCCTCGCCCCCGTgtaattaa--gttcttctaatcaagccgatc-gatcgaccatctctctctgcatg--caggataggatacaatacaacaaattctgaaattcatttctggttgtgtgtatatatgtatgcag--------
                      | | || | |   || || |     | |||      |    |||||||||||||||||||||||||||||  |||| |||||   |    |   ||    |  |   ||| |   |    | | | |     ||   ||| |    |        | | ||   ||    |    | |  ||  | | | |      |           
CTGGGTGTCTCTCTCGGGGTGCTCAACTGCTCACGCGTGGTTAATTTC-TCGCTTTGGTTTCAGGCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactcatcgatcggtccgggttcatctgggtggtttttttttttgatttggttagggttttgtttgtactgatatatggagaggcgcgccgccgcctgcatctgtgttctcgcgtgcctgtgcag

upper sequence: LOC_Os01g42110.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G157675_T01 (Zea mays), 5'ss of exon 1
---------------------------------------------------------ATGATCTCCCCGGACGCGGCTCGCAACGTCGTCGGCATCATCGGCAATGTCATCTCCTTCGGCCTCTTCCTCGCCCCCGTgtaattaagttcttctaatcaagccga----tcgatcgacc-atctctctctgcatgcaggataggatacaatacaacaaattctgaaattcatttctggttgtgtgtatatatgtatgcag
                                                         ||||||||||||||||| || |||||||| |||||||||||||| |  || |  | |    | | |  ||| |    | || || | || ||      ||  |        ||| |||| | || || ||  |  |        || | |   ||  |  |  | |   || |||||| | | ||  |  |           
CTAGCCCGGCCCGTTCCAAAACCTCCGTAGCCGCCGCCGCCACCCCGGCGACCGAAGATGATCTCCCCGGACGCAGCCCGCAACGTAGTCGGCATCATCGgta-cgt-acgtacgataggcgccgcctggaagtc-tggaactcagatcgggctgtcgggttttggtttcgttcgatcgatttcgctgggtgtctctctcggggtgctcaactgctcacgc-gtggttaatttctcgctttggtttcag----------

upper sequence: LOC_Os01g42110.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G157675_T01 (Zea mays), 5'ss of exon 2
ATGATCTCCCCGGACGCGGCTCGCAACGTCGTCGGCATCATCGGCAATGTCATCTCCTTCGGCCTCTTCCTCGCCCCCGTgtaattaa--gttcttctaatcaagccgatc-gatcgaccatctctctctgcatg--caggataggatacaatacaacaaattctgaaattcatttctggttgtgtgtatatatgtatgcag--------
                                           ||||||||||||||||||||||||||||  |||| |||||   |    |   ||    |  |   ||| |   |    | | | |     ||   ||| |    |        | | ||   ||    |    | |  ||  | | | |      |           
-------------------------------------------GCAATGTCATCTCCTTCGGCCTCTTCCTGTCCCCAGTgtaggcactcatcgatcggtccgggttcatctgggtggtttttttttttgatttggttagggttttgtttgtactgatatatggagaggcgcgccgccgcctgcatctgtgttctcgcgtgcctgtgcag