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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGCCTCCGCGAGGTGTCCCTCTCTGTCGTCTTTTCCGTCTGGTGCCTCCTCTTCCTCCTTCGCTCCCAGTTCCTCCACAGCCAGACCGACCCTTCAGgtacgtacccaccacgatccacctcctctcatgctcatggatcgatcgatcaatgtcgtcatgtcacccatggcgtttgattgattgtag

Basic information

species Oryza sativa
transcript LOC_Os01g41600.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g41600.1 (Oryza sativa), 5'ss of exon 1
lower sequence: AC194341.4_FGT003 (Zea mays), 5'ss of exon 1
GGCGGCCTCCGCGAGGTGTCCCTCTCTGTCGTCTTTTCCGTCTGGTGCCTCCTCTTCCTCCTTCGCTCCCAGTTCCTCCACAGCCAGACCGAC-----CCTTCAGgtacgtacccaccacgatccacctcctctcatgctcatggatcg----atcgatcaatgtcgtcatg------tcacccatggcgtttgattgattgtag--------
         |||||||||||  || | |||||||| || || |||||||||||||||||||| || ||||||||||||||||||||| |||||     || |  |  | ||   ||   |  | || ||||   |     | |||||       | |||  |  || |||||      ||   | ||| |  |||| ||  | |         
---------CGCGAGGTGTCTGTCCCCGTCGTCTTCTCGGTTTGGTGCCTCCTCTTCCTCCTGCGATCCCAGTTCCTCCACAGCCAGGCCGACGACGACCCTTCGTCAGgt--tcatttccgttcatctccggacgctagcgtggatgtccatgttgatttacatc-tcatgaatggatcgatcgtggtggatgat-gaccgcatgcatgcag