1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGCGGAGGCACGAATTGCTGCTCAACCGGCGGCCTTGAAGTCTTTATCTCGATCAGTTGCCCACTTTTGCAGATTGCAGGGCGCGCAGTACTGCCGACAGgtactagttatctttggctgtgtttagatccaaaatttgtatccaaacttcagtactttttcatcacatcaacctgtcatacacacaaaacttttcagtc...
species | Oryza sativa |
transcript | LOC_Os01g38359.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATCAGTTGCCCACTTTTGCAGATTGCAGGGCGCGCAGTACTGCCGACAG CAACTCAAGGAGAAACGCAGGTGCCTGCCTAGCCTCAGCAGGCAGGCATGCEST: gi|88338726|gb|CI644183.1|CI644183
genomic: GATCAGTTGCCCACTTTTGCAGATTGCAGGGCGCGCAGTACTGCCGACAGgtactagtta ... ctcttggcagCAACTCAAGGAGAAACGCAGGTGCCTGCCTAGCCTCAGCAGGCAGGCATGC
EST: GATCAGTTGCCCACTTTTGCAGATTGCAGGGCGCGCAGTACTGCCGACAG CAACTCAAGGAGAAACGCAGGTGCCTGCCTAGCCTCAGCAGGCAGGCATGCEST: gi|88343133|gb|CI641659.1|CI641659
genomic: GATCAGTTGCCCACTTTTGCAGATTGCAGGGCGCGCAGTACTGCCGACAGgtactagtta ... ctcttggcagCAACTCAAGGAGAAACGCAGGTGCCTGCCTAGCCTCAGCAGGCAGGCATGC
EST: GATCAGTTGCCCACTTTTGCAGATTGCAGGGCGCGCAGTACTGCCGACAG CAACTCAAGGAGAAACGCAGGTGCCTGCCTAGCCTCAGCAGGCAGGCATGCEST: gi|33663064|gb|CF294031.1|CF294031
genomic: GATCAGTTGCCCACTTTTGCAGATTGCAGGGCGCGCAGTACTGCCGACAGgtactagtta ... ctcttggcagCAACTCAAGGAGAAACGCAGGTGCCTGCCTAGCCTCAGCAGGCAGGCATGC
EST: GATCAGTTGCCCACTTTTGCAGATTGCAGGGCGCGCAGTACTGCCGACAG CAACTCAAGGAGAAACGCAGGTGCCTGCCTAGCCTCAGCAGGCAGGCATGC
genomic: GATCAGTTGCCCACTTTTGCAGATTGCAGGGCGCGCAGTACTGCCGACAGgtactagtta ... ctcttggcagCAACTCAAGGAGAAACGCAGGTGCCTGCCTAGCCTCAGCAGGCAGGCATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGGAGGCACGAATTGCTGCTCAACCGGCGGCCTTGAAGTCTTTATCTCGATCAGTTGCCCACTTTTGCAGATTGCAGGGCGCGCAGTACTGCCGACAGgtactagttatctttggctgtgtttagatccaaaatttgtatccaaacttcagtactttttcatcacatcaacctgtcatacacacaaaacttttcagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT