1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCGGCGTCGGAGGCGCTCCCCCGGGACGAGGCCATCGGCGGCTACATCTTCGTCTGCAACAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCGgtaagcataaccaacctataaattcgatgataaaaccatccaagaattggtacttgaaccctaattattcttgaaccaagaaattatgtcccataaaattaagtttctcatgaacaaatcgtgcttgatgcag
species | Oryza sativa |
transcript | LOC_Os01g36950.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCTGCAACAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCG GGCTTCCATCGAGATACAGGGATTCANTNAGGGCGATCAGGCCAGGGCTGCEST: gi|33684836|gb|CF313075.1|CF313075
genomic: CGTCTGCAACAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCGgtaagcataa ... cttgatgcagGGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGC
EST: GCAACAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCG GGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGCEST: gi|29675526|gb|CB671801.1|CB671801
genomic: GCAACAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCGgtaagcataa ... cttgatgcagGGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGC
EST: AGAGGCAGCTCTTGG GGCTTCCATCGAGATACAGGGATTTCAGTGAGGGCGATCAGGCCAGGGCTGEST: gi|313080398|gb|HO213406.1|HO213406
genomic: AGAGGCAGCTCTTCGgtaagcataa ... cttgatgcagGGCTTCCATCGAGATACAGGGA-TTCAGTGAGGGCGATCAGGCCAGGGCTG
EST: CGTCTGCAACAACGACACCATGGAGGAGAACCTCAAGAGGCAGCTCTTCG GGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGCEST: gi|313080399|gb|HO213407.1|HO213407
genomic: CGTCTGCAACAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCGgtaagcataa ... cttgatgcagGGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGC
EST: CGTCTGCAACAACGACACCATGGAGGAGAACCTCAAGAGGCAGCTCTTCG GGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGCEST: gi|29681137|gb|CB677412.1|CB677412
genomic: CGTCTGCAACAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCGgtaagcataa ... cttgatgcagGGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGC
EST: CAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCG GGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGCEST: gi|29657456|gb|CB653731.1|CB653731
genomic: CAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCGgtaagcataa ... cttgatgcagGGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGC
EST: AGGCAGCTTTTGG GGTTTCCTTCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGCEST: gi|9884513|gb|BE607346.1|BE607346
genomic: AGGCAGCTCTTCGgtaagcataa ... cttgatgcagGGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGC
EST: CGTCTGCAACAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCG GGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGCEST: gi|29682521|gb|CB678796.1|CB678796
genomic: CGTCTGCAACAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCGgtaagcataa ... cttgatgcagGGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGC
EST: GGAAAACCTCAACACGCAGCTCTTCG GGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGCEST: gi|87030339|gb|CI252616.1|CI252616
genomic: GGAAAACCTCAAGAGGCAGCTCTTCGgtaagcataa ... cttgatgcagGGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGC
EST: CGTCTGCAACAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCG GGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGC
genomic: CGTCTGCAACAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCGgtaagcataa ... cttgatgcagGGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGCCAGGGCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCGTCGGAGGCGCTCCCCCGGGACGAGGCCATCGGCGGCTACATCTTCGTCTGCAACAACGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCGgtaagcataaccaacctataaattcgatgataaaaccatccaagaattggtacttgaaccctaattattcttgaaccaagaaattatgtcccataaaattaagtttctcatgaacaaatcgtgcttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC