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TACCTCCGTCGCCGTCCGGTTCCTTTCTCTTCCTCCAAGTAAACTCGGTCTCCGCCGCCTCCTCCGCCGCCGCGCCGCCGATTCGCAGCCATGCCGACCGgtgagctccctccccctcctccctcgcttccctctctcgtattggcggcgatctgatcgccgcggcggggactcgcttctgaatcgccgttcgcgttcct...
species | Oryza sativa |
transcript | LOC_Os01g36930.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGCCGCCTCCTCCGCCGGCGCGCCGCCGATTCGCAGCCATGCCGACCG TAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCAEST: gi|29646291|gb|CB651298.1|CB651298
genomic: TCCGCCGCCTCCTCCGCCGCCGCGCCGCCGATTCGCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
EST: ATTCGCAGCCATGCCGACCG TAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCAEST: gi|29689095|gb|CB685370.1|CB685370
genomic: ATTCGCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
EST: ATTCGCAGCCATGCCGACCG TAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCAEST: gi|88315540|gb|CI615412.1|CI615412
genomic: ATTCGCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
EST: TCCGCCGCCTCCTCCGCCGGCGCGCCGCCGATTCGCAGCCATGCCGACCG TAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCAEST: gi|58681280|gb|CK069967.1|CK069967
genomic: TCCGCCGCCTCCTCCGCCGCCGCGCCGCCGATTCGCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
EST: ATTCGCAGCCATGCCGACCG TAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCAEST: gi|33795963|gb|CF323849.1|CF323849
genomic: ATTCGCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
EST: ATTCGCAGCCATGCCGACCG TAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCAEST: gi|88726053|gb|CI749708.1|CI749708
genomic: ATTCGCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
EST: TCCGCCGCCTCCTCCGCCGNCGCGCCGCCGATTCGCAGCCATGCCGACCG TAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCAEST: gi|29679500|gb|CB675775.1|CB675775
genomic: TCCGCCGCCTCCTCCGCCGCCGCGCCGCCGATTCGCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
EST: ATTCGCAGCCATGCCGACCG TAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCAEST: gi|29615418|gb|CB620430.1|CB620430
genomic: ATTCGCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
EST: GCAGCCATGCCGACCG TAAGCGTGAAATGGCACAAGGAGACCTTCCCAGGCATAGAGATAGACACCAEST: gi|29674105|gb|CB670380.1|CB670380
genomic: GCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
EST: ATTCGCAGCCATGCCGACCG TAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCAEST: gi|88351105|gb|CI623327.1|CI623327
genomic: ATTCGCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
EST: TCCACCGCCTCCTCCGCCGCCGCGCCGCCGATTCGCAGCCATGCCGACCG TAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCAEST: gi|88357489|gb|CI623543.1|CI623543
genomic: TCCGCCGCCTCCTCCGCCGCCGCGCCGCCGATTCGCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
EST: TCCACCGCCTCCTCCGCCGCCGCGCCGCCGATTCGCAGACATGCCGACCG TAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCAEST: gi|29615343|gb|CB620355.1|CB620355
genomic: TCCGCCGCCTCCTCCGCCGCCGCGCCGCCGATTCGCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
EST: GCAGCCATGCCGACCG TAAGCGTGAAATGGCCCAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
genomic: GCAGCCATGCCGACCGgtgagctccc ... tgctttccagTAAGCGTGAAATGGCAGAAGGAGACCTTCCCAGGCATAGAGATAGACACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCTCCGTCGCCGTCCGGTTCCTTTCTCTTCCTCCAAGTAAACTCGGTCTCCGCCGCCTCCTCCGCCGCCGCGCCGCCGATTCGCAGCCATGCCGACCGgtgagctccctccccctcctccctcgcttccctctctcgtattggcggcgatctgatcgccgcggcggggactcgcttctgaatcgccgttcgcgttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcggcg