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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACCAAGGTCGCCCTCCCGGCGCCGCGCCTCTGCCGCCAGTTCTGGAAGTCGGGCGACTACGTCGTCGCCCAGCGCAACCCCGACGCCGATGCACCCGgtaagctaaggctagctaagcacctagggttctcccatttcgcttcgcttcttagctttccgtttggattttggtggaggcaagtttgacggtttgaagaggctgactgatatggggttgcgattcggtgctggtgtatgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g36840.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g36840.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G030596_T01 (Zea mays), 5'ss of exon 1
--TCCACCAAGGTCGCCCTCCCGGCGCCGCGCCTCTGCCGCCAGTTCTGGAAGTCGGGCGACTACGTCGTCGCCCAGCGCAACCCCGACGCCGATGCACCCGgtaagctaaggctagctaagcacctagggttctcccatttcgcttcgcttcttagctttccgtttggattttggtggaggcaagtttgacggtttgaagaggctgactgatatggggttgcgattcggtgctggtgtatgtgcag
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TCACCGCCCAGGGCG--CTCCCGCCGCCGCGCCTCTGCCGCCAGTTCTGGAAGTCCGGCGACTACGTCGTCGCGCGCCGCAACCCCGATGTGGCCGGCCCCGgtaggctatcggtcgg-aggaatctcgg----ccccaatttctgctgcctcttcgctttcctttgatacttccggtgggg--------atgg--tgatcaagctgagtgagat----ttgcgatttggtg-----gtgcgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58689030|gb|CK077717.1|CK077717
EST:     GTCGGGCGACTACGTCGTCGCCCAGCGCAACCCCGACGCCGATGCACCCG                         GTGGGCGGAACCGACTTCGGATTAATCCCAGGTTCCTGCACTCGAATGCTA
genomic: GTCGGGCGACTACGTCGTCGCCCAGCGCAACCCCGACGCCGATGCACCCGgtaagctaag ... gtatgtgcagGTGGGCGGAACCGACTTCGGATTAATCCCAGGTTCCTGCACTCGAATGCTA