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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGTCCCCATCGGGGAGCCCGTCAAGATCACCGGCAGGGGGAAGAAGCAGCGCAAGCATTACACCTCCTTCGAGTACGAGGGCAACACCTTCGAGCTCgtatgccgcctcctcccccccattttggctagggtttttagggtttttgatgattttcccaaattctgatttttcttttttcttttgcggattgatgattgttgtcgatttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g34330.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g34330.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G578572_T02 (Zea mays), 5'ss of exon 1
GGCGGTCCCCATCGGGGAGCCCGTCAAGATCACCGGCAGGGGGAAGAAGCAGCGCAAGCATTACACCTCCTTCGAGTACGAGGGCAACACCTTCGAGCTCgtatgccgcctcctcc----cccccattttggctagggtttttagggtttttgatgattttcccaaatt-ctgatttttcttttttcttttgcggattgatgattgttgtcgatt-tgcag
| | ||  |  | ||||| || ||||||||||| |||| |||||||||||||   ||||| ||  | |||||||||||||||||||||| ||||||||| ||| ||| ||||||||    | | | |   |  |   | | |   ||| |||  ||  ||||   |    |  ||| || | ||| |  | |  ||||| ||   ||  || |||  ||||
GCCCGTAGCTGTAGGGGACCCGGTCAAGATCACTGGCAAGGGGAAGAAGCAGAAGAAGCACTATGCTTCCTTCGAGTACGAGGGCAACAGCTTCGAGCTGgtaagcctcctcctccgtttctcgcttccagatttttgctctcttggtattttttgggtttctggaggcgcaaattgttttctttccggtggttgattgctgcgggt--tcaattgcgcag