Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGAGAGCAACCATGGGTGTATTGGACAGCCTCTCTGATATGTGCAGCCTGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaattttctcgatcttgatcgatttatatatactacatgcatgcatgtttgctcaaatttcgttggctaattaagcacagagataaattaatttgtgaagttcttgtgcttcttcattaattaatttggtgatgtgtttttgcttatacaatatgtgtgtgtag

Basic information

species Oryza sativa
transcript LOC_Os01g32330.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g32330.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G104041_T01 (Zea mays), 5'ss of exon 1
ACAGAGAGCAACCATGGGTGTATTGGACAGCCTCTCTGATATGTGCAGCCTGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaattttctcgatcttgatcgatttatatatactacatgcatgcatgtttgctcaaatttcgttggctaattaa-gcacagagataaattaatttgtgaagttcttgtgcttcttcattaattaatttggtgatgtgtttttgcttatacaatatgtgtgtgtag
|  |  || | |||||||  |  |||||  ||| ||  || |||||||| | || ||||| ||||| || |||||||| |||||||||||||| ||||||||    ||   |    || || |  |   ||     | |  | ||| ||| || | |||     || ||    | |||   || | |      ||   |   ||                                                                   
AGCGGCAGTAGCCATGGGCATCCTGGACCACCTGTCGCATCTGTGCAGCATCACGGAGACGAAGGAGGCGCTCAAGCTCAGGAAGAAGCGGCCGCTGCAGgtacggtatggtatgagagctag--ctgcttgctgctgcctcctgc-tgc-tgctagctgctgctttgtctcttgattcgcgcgctgcatgccatggttgcttggcag---------------------------------------------------------------

upper sequence: LOC_Os01g32330.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G059836_T01 (Zea mays), 5'ss of exon 1
ACAGAGAGCAACCATGGGTGTATTGGACAGCCTCTCTGATATGTGCAGCCTGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaattttctcgatcttgatcgatttatatatactacatgcat--gcatgtttgctcaaatttcgttggctaattaagcacagagataaattaatttgtgaagttcttgtgcttcttcattaattaatttggtgatgtgtttttgcttatacaatatgtgtgtgtag
     | |   |||||||  |  |||||  | | ||  || |||||||| | || ||||| ||||| || |||||||| ||||||||||| || ||||||||  |    |    |  ||| | ||  |||||  |      |||||||  |||||  |||   |      |||    ||        |    |                                                                               
TGGCCGTGGCGCCATGGGCATCCTGGACCACATGTCGCATGTGTGCAGCATCACGGAGACGAAGGAGGCGCTCAAGCTCAGGAAGAAGCGACCGCTGCAGgtaatgct-tgcctttaatcattatatatttaatttcctcccatgcatctgcatgcatgcctgatgagttttgatgcatgggcggtggttgcag------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218491852|gb|FG962213.1|FG962213
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218493650|gb|FG944855.1|FG944855
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTACGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88449614|gb|CI579894.1|CI579894
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88359345|gb|CI679872.1|CI679872
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218490967|gb|FG950248.1|FG950248
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|38481060|gb|CF965149.1|CF965149
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88349086|gb|CI678050.1|CI678050
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|58694294|gb|CK082981.1|CK082981
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88592415|gb|CI710517.1|CI710517
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88383000|gb|CI683098.1|CI683098
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88412697|gb|CI690450.1|CI690450
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|2310718|gb|C26873.1|C26873
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|89167354|gb|CI252885.1|CI252885
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218487802|gb|FG952793.1|FG952793
EST:     TGAC-GAGACCAAGGAAGCCCTC-AGCTAAGGAAG-AGCGGCCACTGC-G                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218489468|gb|FG962654.1|FG962654
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|38478436|gb|CF962569.1|CF962569
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCAGTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218490962|gb|FG955473.1|FG955473
EST:     GGAAGCCCTC-AGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: GGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88580832|gb|CI697789.1|CI697789
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88732333|gb|CI755510.1|CI755510
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|33675682|gb|CF303921.1|CF303921
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88590574|gb|CI708349.1|CI708349
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218483219|gb|FG948003.1|FG948003
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88368546|gb|CI672675.1|CI672675
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218502136|gb|FG944930.1|FG944930
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88404170|gb|CI575658.1|CI575658
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATTGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|23513207|gb|BU673034.1|BU673034
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|58593733|gb|CF992041.1|CF992041
EST:     GACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCGGGTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGT
genomic: GACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCC-ACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGT
EST: gi|88371370|gb|CI600218.1|CI600218
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAATGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGATGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88371890|gb|CI681403.1|CI681403
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|86898914|gb|CI296150.1|CI296150
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|55414891|gb|CV727267.1|CV727267
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGTCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88352878|gb|CI678907.1|CI678907
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|87011286|gb|CI289556.1|CI289556
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|42591847|gb|CK738333.1|CK738333
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGG
EST: gi|218481734|gb|FG963629.1|FG963629
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|86910020|gb|CI292925.1|CI292925
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|38481440|gb|CF965529.1|CF965529
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218492324|gb|FG948432.1|FG948432
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218504936|gb|FG955228.1|FG955228
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|86595663|gb|CI288356.1|CI288356
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88591000|gb|CI707905.1|CI707905
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218498424|gb|FG947129.1|FG947129
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218497414|gb|FG947805.1|FG947805
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88397571|gb|CI684497.1|CI684497
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88664640|gb|CI700724.1|CI700724
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|55414353|gb|CV726729.1|CV726729
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218483558|gb|FG957329.1|FG957329
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88307028|gb|CI639461.1|CI639461
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88407401|gb|CI583859.1|CI583859
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218487011|gb|FG958890.1|FG958890
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|29685398|gb|CB681673.1|CB681673
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218482173|gb|FG968780.1|FG968780
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88404885|gb|CI685318.1|CI685318
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218496805|gb|FG947943.1|FG947943
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218492513|gb|FG943259.1|FG943259
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88582043|gb|CI699270.1|CI699270
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|33801228|gb|CF326487.1|CF326487
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218489322|gb|FG950116.1|FG950116
EST:     AGACCAAGGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: AGACCAA-GGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88591073|gb|CI707980.1|CI707980
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218488242|gb|FG957846.1|FG957846
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|88573545|gb|CI665314.1|CI665314
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|38479020|gb|CF963153.1|CF963153
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|87017581|gb|CI289714.1|CI289714
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGT
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGT
EST: gi|218490363|gb|FG951154.1|FG951154
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218487825|gb|FG949545.1|FG949545
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|218484792|gb|FG943707.1|FG943707
EST:     TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
genomic: TGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTG
EST: gi|58590594|gb|CF988902.1|CF988902
EST:     AGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAG                         ACGGTGAACATCAAGGTGAAGATGGGCTGCGAGGGGTGCGAGAGTGAGGGT
genomic: AGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAG-GAGGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 69 (upstream exon), 73 (downstream exon)
Score: 17

ACAGAGAGCAACCATGGGTGTATTGGACAGCCTCTCTGATATGTGCAGCCTGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaat ... gtgtgtgtagACGGTGAACATCAAGGTGAAGATGGACTGCGAGGGGTGCGAGAGGAGGGTGAAGAACGCGGTGAAGTCGATGCGAGGGGTGACGAGCGTGGCGGTGAACC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGAGAGCAACCATGGGTGTATTGGACAGCCTCTCTGATATGTGCAGCCTGACAGAGACCAAGGAAGCCCTCAAGCTAAGGAAGAAGCGGCCACTGCAGgtgttttaattttctcgatcttgatcgatttatatatactacatgcatgcatgtttgctcaaatttcgttggctaattaagcacagagataaattaatttgtgaagttcttgtgcttcttcattaattaatttggtgatgtgtttttgcttatacaatatgtgtgtgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG