Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATCACAACACCATCCATCCATCTTAATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaatatatgaggactagcttaattatgtttgcactatttagaagttgagatttcggcatttacaaactacatcgatttgctaaatttggttaatgatttgcttatatatgtattattggttatatatgtcag

Basic information

species Oryza sativa
transcript LOC_Os01g29840.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|95100899|gb|CI692621.1|CI692621
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88343665|gb|CI677648.1|CI677648
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88583519|gb|CI701006.1|CI701006
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88369836|gb|CI680510.1|CI680510
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88393937|gb|CI684204.1|CI684204
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88593072|gb|CI711223.1|CI711223
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88587969|gb|CI705755.1|CI705755
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88460089|gb|CI695287.1|CI695287
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88592523|gb|CI710629.1|CI710629
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88322050|gb|CI673202.1|CI673202
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88371896|gb|CI681409.1|CI681409
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88401270|gb|CI685266.1|CI685266
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88588897|gb|CI706743.1|CI706743
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88590684|gb|CI707563.1|CI707563
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|95100592|gb|CI692292.1|CI692292
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88391917|gb|CI683734.1|CI683734
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88592499|gb|CI710605.1|CI710605
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88337971|gb|CI676952.1|CI676952
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88576734|gb|CI673257.1|CI673257
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88440890|gb|CI693465.1|CI693465
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88577783|gb|CI674393.1|CI674393
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88584820|gb|CI702399.1|CI702399
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|95101169|gb|CI692904.1|CI692904
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88400985|gb|CI684963.1|CI684963
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88425645|gb|CI689292.1|CI689292
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88334630|gb|CI676415.1|CI676415
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88588554|gb|CI706377.1|CI706377
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88379096|gb|CI681929.1|CI681929
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88578513|gb|CI687449.1|CI687449
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88589810|gb|CI708622.1|CI708622
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88440953|gb|CI693531.1|CI693531
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88583600|gb|CI701096.1|CI701096
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAA-TTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88458223|gb|CI695404.1|CI695404
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88325421|gb|CI675222.1|CI675222
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88590617|gb|CI708395.1|CI708395
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88460108|gb|CI695308.1|CI695308
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88579949|gb|CI691946.1|CI691946
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88436480|gb|CI691200.1|CI691200
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88440980|gb|CI693560.1|CI693560
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88581464|gb|CI698455.1|CI698455
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88588754|gb|CI706593.1|CI706593
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88375480|gb|CI681253.1|CI681253
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88405004|gb|CI685443.1|CI685443
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88414391|gb|CI691551.1|CI691551
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88427739|gb|CI689606.1|CI689606
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88588664|gb|CI706500.1|CI706500
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88589742|gb|CI708546.1|CI708546
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88594175|gb|CI711415.1|CI711415
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88959102|gb|CI685813.1|CI685813
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88588567|gb|CI706392.1|CI706392
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88349216|gb|CI678191.1|CI678191
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|1631969|gb|C19698.1|C19698
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88355588|gb|CI679310.1|CI679310
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88588397|gb|CI706212.1|CI706212
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
EST: gi|88580313|gb|CI697230.1|CI697230
EST:     ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAG                         GTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG
genomic: ATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 75 (downstream exon)
Score: 51

ATTCATCACAACACCATCCATCCATCTTAATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaa ... tatatgtcagGTTGAAGCGATCGAGATCATCGTTGAGAGCTGTAGTACGTGGTGAGCATGGGAGAGCAGCAGCAGCAGGTGGAGCGGCAGCCTGACCTGCCTCCGGGCTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCATCACAACACCATCCATCCATCTTAATTCGCTTCTACATTGGGGCGCTTGTTAATTTACATGCGAGCTTGTTGAGgtatgttcaatatatgaggactagcttaattatgtttgcactatttagaagttgagatttcggcatttacaaactacatcgatttgctaaatttggttaatgatttgcttatatatgtattattggttatatatgtcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT