1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTCGGGAGGATCACGTGGAGAGGAGGTCCCACCCGGTTGCTGCTCCTGGACGAGAACTATGCCAACAAGAGGGTTGATGACCTCCCGGAGGCTGTCAAGgtgatgaattcttgtcaccaaatagcctttcatagttgcagttgtagaaataaaaatcacataggttaggaaaagtttctatttgaatgattctgtggat...
species | Oryza sativa |
transcript | LOC_Os01g29409.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGAGAACTATGCCAACAAGAGGGTTGATGACCTCCCGGAGGCTGTCAAG GTTGTGTTGGACCATGAAACTAACAAGGATGGATCTTCATCCTACGAGCTTEST: gi|218482000|gb|FG964119.1|FG964119
genomic: ACGAGAACTATGCCAACAAGAGGGTTGATGACCTCCCGGAGGCTGTCAAGgtgatgaatt ... aacttttcagGTTGTGTTGGACCATGAAACTAACAAGGATGGATCTTCATCCTACGAGCTT
EST: ACGAGAACTATGCCAACAAGAGGGTTGATGACCTCCCGGAGGCTGTCAAG GTTGTGTTGGACCATGAAACTAACAAGGATGGATCTTCATCCTACGAGCTTEST: gi|29618955|gb|CB623967.1|CB623967
genomic: ACGAGAACTATGCCAACAAGAGGGTTGATGACCTCCCGGAGGCTGTCAAGgtgatgaatt ... aacttttcagGTTGTGTTGGACCATGAAACTAACAAGGATGGATCTTCATCCTACGAGCTT
EST: ACGAGAACTATGCCAACAAGAGGGTTGATGACCTCCCGGAGGCTGTCAAG GTTGTGTTGGACCATGAAACTAACAAGGATGGATCTTCATCCTACGAGCTT
genomic: ACGAGAACTATGCCAACAAGAGGGTTGATGACCTCCCGGAGGCTGTCAAGgtgatgaatt ... aacttttcagGTTGTGTTGGACCATGAAACTAACAAGGATGGATCTTCATCCTACGAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGGGAGGATCACGTGGAGAGGAGGTCCCACCCGGTTGCTGCTCCTGGACGAGAACTATGCCAACAAGAGGGTTGATGACCTCCCGGAGGCTGTCAAGgtgatgaattcttgtcaccaaatagcctttcatagttgcagttgtagaaataaaaatcacataggttaggaaaagtttctatttgaatgattctgtggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa