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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCAAGGGGACACGGCTTCCTTGCTGGAGAGCTGCTGCCGGTGTTGCCGTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGTgtaagcgacctcgccctcaccaggatgcttcgtttctagggttaggtttggggtgcttcagattgaggaaatctggggcttaaatggtcaattaggttta...

Basic information

species Oryza sativa
transcript LOC_Os01g28989.6
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29668997|gb|CB665272.1|CB665272
EST:     GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGT                         AAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
genomic: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGTgtaagcgacc ... tgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
EST: gi|58597707|gb|CK008235.1|CK008235
EST:     GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGT                         AAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
genomic: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGTgtaagcgacc ... tgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
EST: gi|58694230|gb|CK082917.1|CK082917
EST:     GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGT                         AAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
genomic: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGTgtaagcgacc ... tgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
EST: gi|29623281|gb|CB628292.1|CB628292
EST:     GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGT                         AAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
genomic: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGTgtaagcgacc ... tgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
EST: gi|33683399|gb|CF311638.1|CF311638
EST:     GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGT                         AAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
genomic: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGTgtaagcgacc ... tgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
EST: gi|29671851|gb|CB668126.1|CB668126
EST:     GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGT                         AAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
genomic: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGTgtaagcgacc ... tgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
EST: gi|29658148|gb|CB654423.1|CB654423
EST:     GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGT                         AAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA
genomic: GTCGTCGTCCTCCCCCGCCGATTACGAGTGCTACGTCCACTACACCGAGTgtaagcgacc ... tgtttgtcagAAACCTGTCGAATGGGAGGCACCATCATAATTATATGATCCAGCATTATGA