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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCGGCGAGGTCGACCCCGCCGCCTACCCGCTGCCCAAGACCAAGCTCACGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACGgtccgtctgtttcgcctcacaccacgaaaactgaagccctttctgaagtagactacagaaatttctagattttgcaacttccgcactagttttgataaat...

Basic information

species Oryza sativa
transcript LOC_Os01g27520.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g27520.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G083836_T02 (Zea mays), 5'ss of exon 1
GGTCGGCGAGGTCGACCCCGCCGCCTACCCGCTGCCCAAGACCAAG------CTCACGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACGgtccgtctgtttcgcctcacaccacgaaaactgaa-gccctttctgaagtagactacagaaatttctagattttgcaacttccgcactagttttgataaat--
      |||||||||  |||||| ||||||||||||||||  ||||      |||||||||||||| |||||||||||||| |||||||| || |||||||||||||| ||||  |||| | |  |    |   | ||    |  || | |    |    ||||     | | || |  || |    | |  || |   |  || |   
------CGAGGTCGATGCCGCCGTCTACCCGCTGCCCAAGGGCAAGGTCAAACTCACGCTCGAGAAGCTCAGGGACGTCGTTCATCTCCGTTCGCGCACCAACACGgtgcgtccctttcccttttccttcctccatcttcttgatctatttagccttatttacacg---tgccagctcatggatgcccagatcttgcaattgtagaagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41883970|gb|BX928801.1|BX928801
EST:     CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACG                         ATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGG
genomic: CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACGgtccgtctgt ... tattttgcagATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGG
EST: gi|29620980|gb|CB625991.1|CB625991
EST:     CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACA                         ATTGGTGCTGTTGCGCGTATTAAACACCAGCTAGCCTGTGCAACACACAGG
genomic: CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACGgtccgtctgt ... tattttgcagATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGG
EST: gi|29682186|gb|CB678461.1|CB678461
EST:     CGCTCGAGAATCTCAGGGACGTCGTCCACCTCCGCTCCCGCACCAACACG                         ATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGG
genomic: CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACGgtccgtctgt ... tattttgcagATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGG
EST: gi|117210017|gb|CT851155.1|CT851155
EST:     CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACG                         ATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGG
genomic: CGCTCGAGAATCTCAGGGACGTCGTCCATCTCCGCTCCCGCACCAACACGgtccgtctgt ... tattttgcagATTGGTGCTGTTGCGCGTATTAGACACCAGCTAGCCTGTGCAACACACAGG