1 5' 3' | 2 5' 3' | 3 5' 3' |
TCCGCTCCTTGCCTCCTTGCGCCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctctttctgattcatctctctctctctctctctcccaccccaccgggactggaatttgcttgcgttcgtgaaccctactagcttctcttctag...
species | Oryza sativa |
transcript | LOC_Os01g25880.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTG GAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCTEST: gi|88314179|gb|CI602511.1|CI602511
genomic: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctc ... aaaaatgtagGAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCT
EST: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTG GAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCTEST: gi|88301045|gb|CI592225.1|CI592225
genomic: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctc ... aaaaatgtagGAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCT
EST: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTG GAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCTEST: gi|88313188|gb|CI594818.1|CI594818
genomic: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctc ... aaaaatgtagGAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCT
EST: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTG GAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCTEST: gi|38473157|gb|CF957289.1|CF957289
genomic: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctc ... aaaaatgtagGAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCT
EST: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTG GAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCTEST: gi|88300648|gb|CI587452.1|CI587452
genomic: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctc ... aaaaatgtagGAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCT
EST: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTG GAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCTEST: gi|58595486|gb|CK006014.1|CK006014
genomic: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctc ... aaaaatgtagGAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCT
EST: GGTGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTG GAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCTEST: gi|88387818|gb|CI587906.1|CI587906
genomic: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctc ... aaaaatgtagGAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCT
EST: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTG GAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCTEST: gi|88386515|gb|CI575293.1|CI575293
genomic: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctc ... aaaaatgtagGAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCT
EST: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTG GAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCTEST: gi|33689062|gb|CF317301.1|CF317301
genomic: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctc ... aaaaatgtagGAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCT
EST: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGG-GGGGAGGGGATCCTG GAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCTEST: gi|88312093|gb|CI580258.1|CI580258
genomic: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctc ... aaaaatgtagGAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCT
EST: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTG GAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCT
genomic: GGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctc ... aaaaatgtagGAGTGAAATAAAAGGATGAGGCTGGTTGGATTGACTGGTGGGATTGCGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGCTCCTTGCCTCCTTGCGCCGCCGCCAAGACGAGTCGCGGCTGAACAGGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGATCCTGgtgcgtcctctttctgattcatctctctctctctctctctcccaccccaccgggactggaatttgcttgcgttcgtgaaccctactagcttctcttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctct
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc