1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGATGGGGTGGCGCATCAGGCGGCCGGAGGGCCGCGCCTTCTTCCACCACCCCACCGGCCGGTTCTGCGACGGCCGCCTCACCATCGACTTCCTCTGTCAgttaatcttcaccttccttcctgttcctcccttcctgctcctgtagcttttgcattcgtcgagttctctcttctcttcgccttcttcgataaccatctct...
species | Oryza sativa |
transcript | LOC_Os01g22660.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCACCGGCCGGTTCTGCGACGGCCGCCTCACCATCGACTTCCTCTGT-- G--AAAGTTTAAACATAGGTTATTTGAGTCCGTACCTGAAGGCATTGGGTTEST: gi|58685309|gb|CK073996.1|CK073996
genomic: CCCACCGGCCGGTTCTGCGACGGCCGCCTCACCATCGACTTCCTCTGTCAgttaatcttc ... atgcatccagGTGAAAGTTTAAACATAGGTTATTTGAGTCCGTACCTGAAGGCATTGGGTT
EST: CCCACCGGGCGGTTCTGCGACGGCCGCCTCACCATCGACTTCCTC--T-- GTGAAAGTTTAAACATAGGTTATTTGAGTCCGTACCTGAAGGCATTGGGTT
genomic: CCCACCGGCCGGTTCTGCGACGGCCGCCTCACCATCGACTTCCTCTGTCAgttaatcttc ... atgcatccagGTGAAAGTTTAAACATAGGTTATTTGAGTCCGTACCTGAAGGCATTGGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATGGGGTGGCGCATCAGGCGGCCGGAGGGCCGCGCCTTCTTCCACCACCCCACCGGCCGGTTCTGCGACGGCCGCCTCACCATCGACTTCCTCTGTCAgttaatcttcaccttccttcctgttcctcccttcctgctcctgtagcttttgcattcgtcgagttctctcttctcttcgccttcttcgataaccatctct
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcttc