1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGTAGCTTCGGGCGTGGTCGATCCGGGGTGTTGCTGTTCTTGGTGGGTGGCCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGgtggtggctgcttctgcctctcttcttgattgtgattgctgctgcaatgtgcctacctttgttgtttgtttcttggtctggatctcggggtgaccgtcat...
species | Oryza sativa |
transcript | LOC_Os01g21960.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAG GAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCATEST: gi|29633856|gb|CB638865.1|CB638865
genomic: CCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGgtggtggctg ... ttgtttgcagGAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCAT
EST: CCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAC GAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCATEST: gi|58604808|gb|CK015336.1|CK015336
genomic: CCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGgtggtggctg ... ttgtttgcagGAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCAT
EST: GGAGGAGATCTGGAGATCTCTCAG GAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCATEST: gi|13806431|gb|AU181517.1|AU181517
genomic: GGAGGAGATCTGGAGATCTCTCAGgtggtggctg ... ttgtttgcagGAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCAT
EST: CCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAG GAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCAT
genomic: CCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGgtggtggctg ... ttgtttgcagGAGCGAAGCATTGACATTCCGCTATGGAGGCTCCTTCGTCGTCCCCGTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAGCTTCGGGCGTGGTCGATCCGGGGTGTTGCTGTTCTTGGTGGGTGGCCTGCTGCTGCTGCTGAGGAGGTGAAGGAGGAGATCTGGAGATCTCTCAGgtggtggctgcttctgcctctcttcttgattgtgattgctgctgcaatgtgcctacctttgttgtttgtttcttggtctggatctcggggtgaccgtcat
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcttc