1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCCGGCCTCCAGGGCGTGCCCGCTGCTGGACGGCGCTCTCCCGCGTCCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTGgtatctctctctctctctctatctatctctgcttggttagttatttgttttgcaaaagcgattcgtttggaatctccatctgcttggttagttattgttc...
species | Oryza sativa |
transcript | LOC_Os01g19150.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTG GTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAACEST: gi|117211748|gb|CT851732.1|CT851732
genomic: GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTGgtatctctct ... gttgttgcagGTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC
EST: GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTG GTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAACEST: gi|29675685|gb|CB671960.1|CB671960
genomic: GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTGgtatctctct ... gttgttgcagGTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC
EST: GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTG GTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAACEST: gi|29682099|gb|CB678374.1|CB678374
genomic: GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTGgtatctctct ... gttgttgcagGTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC
EST: GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCTCCGAAGCGATCCGTTG GTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC
genomic: GGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTGgtatctctct ... gttgttgcagGTGGATTGTGTGTAGCTCTGTAACAAAGGATCTTGGTCCATAGGAGTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGGCCTCCAGGGCGTGCCCGCTGCTGGACGGCGCTCTCCCGCGTCCGTGGCTACCTCCTCCTCCGGGTTTGCGTTGCCGTCGCCGAAGCGATCCGTTGgtatctctctctctctctctatctatctctgcttggttagttatttgttttgcaaaagcgattcgtttggaatctccatctgcttggttagttattgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC