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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCACTGAGAGAGGGCCACTCTTTCCCCTCGAGTTCTTCACCGGCTTCTTTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtccaggttcctcttagcttcttaaattacttgcaatcaactctgcagttaagttatttgggatcctatcactctgtggtgcataattatctct...

Basic information

species Oryza sativa
transcript LOC_Os01g18630.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88362336|gb|CI608727.1|CI608727
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88432505|gb|CI567544.1|CI567544
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88733902|gb|CI755338.1|CI755338
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88417276|gb|CI576350.1|CI576350
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88377368|gb|CI602853.1|CI602853
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88369528|gb|CI582723.1|CI582723
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88574616|gb|CI666385.1|CI666385
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88417907|gb|CI596584.1|CI596584
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88735150|gb|CI758658.1|CI758658
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88301235|gb|CI594761.1|CI594761
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88760034|gb|CI769590.1|CI769590
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88420647|gb|CI564483.1|CI564483
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88397362|gb|CI580872.1|CI580872
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88401360|gb|CI585916.1|CI585916
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCCTGGTCACTTGCTTG
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTG-CCTGGTCACTTGCTTG
EST: gi|38477201|gb|CF961334.1|CF961334
EST:     TTCCCCTCCTCTCCGGACCAGTGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCAGGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|29645987|gb|CB650994.1|CB650994
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|300216028|gb|HO088654.1|HO088654
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88723842|gb|CI745539.1|CI745539
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88426130|gb|CI574013.1|CI574013
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88387050|gb|CI577836.1|CI577836
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|117226899|gb|CT848683.1|CT848683
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|29631102|gb|CB636111.1|CB636111
EST:     TTCCCCTCCTCTCCGGACCATGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88411758|gb|CI571250.1|CI571250
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88372274|gb|CI619604.1|CI619604
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88300023|gb|CI580084.1|CI580084
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGAAGGAACCATCTTTGGCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88421158|gb|CI566999.1|CI566999
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88417237|gb|CI576311.1|CI576311
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|25777886|gb|CA752636.1|CA752636
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88405525|gb|CI588731.1|CI588731
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88738454|gb|CI761962.1|CI761962
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTG
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAA-Ggtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTG
EST: gi|29639114|gb|CB644123.1|CB644123
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|33655849|gb|CF278463.1|CF278463
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88368331|gb|CI577602.1|CI577602
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88294699|gb|CI602419.1|CI602419
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88395139|gb|CI609455.1|CI609455
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|29643123|gb|CB648130.1|CB648130
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88407764|gb|CI607898.1|CI607898
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88432506|gb|CI567545.1|CI567545
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88735649|gb|CI759157.1|CI759157
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88394428|gb|CI603617.1|CI603617
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTACCTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCATTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88453344|gb|CI565786.1|CI565786
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88417247|gb|CI576321.1|CI576321
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88317332|gb|CI627981.1|CI627981
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88407803|gb|CI607937.1|CI607937
EST:     TTCCCCTCCTCTCCGGAACAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88390396|gb|CI607432.1|CI607432
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|2428018|gb|C72481.1|C72481
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88422538|gb|CI571520.1|CI571520
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGAT-GGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88397806|gb|CI583124.1|CI583124
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88433514|gb|CI594328.1|CI594328
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|29662753|gb|CB659028.1|CB659028
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88416903|gb|CI573618.1|CI573618
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GAGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|58611677|gb|CK039389.1|CK039389
EST:     CCCTCCTCTCCGGACCA-GGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: CCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88724269|gb|CI747528.1|CI747528
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88734923|gb|CI758431.1|CI758431
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88351779|gb|CI617504.1|CI617504
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88412248|gb|CI573524.1|CI573524
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88403985|gb|CI601395.1|CI601395
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88426534|gb|CI579363.1|CI579363
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|33664969|gb|CF295936.1|CF295936
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88324382|gb|CI566195.1|CI566195
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|300215808|gb|HO088434.1|HO088434
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88397057|gb|CI593269.1|CI593269
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88304198|gb|CI599886.1|CI599886
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88395886|gb|CI593088.1|CI593088
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88716917|gb|CI740427.1|CI740427
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88399126|gb|CI603793.1|CI603793
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88421173|gb|CI567014.1|CI567014
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88363425|gb|CI617986.1|CI617986
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88401348|gb|CI585904.1|CI585904
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGA-GGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|33654015|gb|CF276629.1|CF276629
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|29635435|gb|CB640444.1|CB640444
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|29631069|gb|CB636078.1|CB636078
EST:     TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
EST: gi|88317269|gb|CI626912.1|CI626912
EST:     TCCCCTCCTCTCCGGACCAGGGCAAGCAGCTAACTGTCTGCGCAAGAAAG                         GTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT
genomic: TCCCCTCCTCTCCGGACCAGGG-AAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 50

TACCACTGAGAGAGGGCCACTCTTTCCCCTCGAGTTCTTCACCGGCTTCTTTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtcc ... tataccttagGTGGTTCAAGCACGATGGGACGGAACCATCTTTGCCTGGTCACTTGCTTGTGGATTCTGTCATGCGCAGTTCTGCTTCATGCTTCTCCTGATGGATTGCT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACCACTGAGAGAGGGCCACTCTTTCCCCTCGAGTTCTTCACCGGCTTCTTTCCCCTCCTCTCCGGACCAGGGAAGCAGCTAACTGTCTGCGCAAGAAAGgtatgagtccaggttcctcttagcttcttaaattacttgcaatcaactctgcagttaagttatttgggatcctatcactctgtggtgcataattatctct

- - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA