1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGAGATGAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgcccaactcctttccctctctcctctcctctccgatctccgcctcgccctcggggcattgctggggagggatgcggtggcgctggcgctggc...
species | Oryza sativa |
transcript | LOC_Os01g16030.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88694598|gb|CI738636.1|CI738636
genomic: AGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88760986|gb|CI770542.1|CI770542
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88570416|gb|CI661789.1|CI661789
genomic: GAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88353172|gb|CI654438.1|CI654438
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGGTTGEST: gi|88357962|gb|CI650698.1|CI650698
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAA----Ggttggtacgc ... attgttt
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|163929270|gb|EG711031.1|EG711031
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GATGAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|117234117|gb|CT842356.1|CT842356
genomic: GATGAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: ATGAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88302447|gb|CI668293.1|CI668293
genomic: ATGAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGGTTGEST: gi|88347834|gb|CI635927.1|CI635927
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAA----Ggttggtacgc ... attgttt
EST: GAGAGAGGCCAGGCGCGCGCACGAGATCGATCTCCAGCAAGGTTGEST: gi|88453678|gb|CI683368.1|CI683368
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAA----Ggttggtacgc ... attgttt
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88341662|gb|CI641414.1|CI641414
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88454148|gb|CI693823.1|CI693823
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88341576|gb|CI641328.1|CI641328
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88454038|gb|CI691003.1|CI691003
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88570756|gb|CI662129.1|CI662129
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88410309|gb|CI575907.1|CI575907
genomic: GAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GATGAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88735809|gb|CI757384.1|CI757384
genomic: GATGAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGGCCANGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|2310839|gb|C26994.1|C26994
genomic: GAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: CGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTNCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88572261|gb|CI663832.1|CI663832
genomic: CGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88742204|gb|CI765712.1|CI765712
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACCGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88734570|gb|CI758078.1|CI758078
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88349175|gb|CI678148.1|CI678148
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88305327|gb|CI653053.1|CI653053
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88572018|gb|CI663589.1|CI663589
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: AGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88664650|gb|CI700897.1|CI700897
genomic: AGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88369043|gb|CI677620.1|CI677620
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88571110|gb|CI662483.1|CI662483
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGGTTGEST: gi|66915825|gb|CX102673.1|CX102673
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAA----Ggttggtacgc ... attgttt
EST: CACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88762783|gb|CI772339.1|CI772339
genomic: CACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGCEST: gi|88333173|gb|CI641016.1|CI641016
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
EST: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGGTTGEST: gi|396941528|gb|HO188737.1|HO188737
genomic: GAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAA----Ggttggtacgc ... attgttt
EST: ACGAGATCGATCTCCAGCAAG GTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
genomic: ACGAGATCGATCTCCAGCAAGgttggtacgc ... attgtttaagGTCTTGCACAACTGCGGCAAGATGGGCCTCACTTTCACGAAGCTTTTCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGATGAGAGAGGCCACGCGCGCGCACGAGATCGATCTCCAGCAAGgttggtacgcccaactcctttccctctctcctctcctctccgatctccgcctcgccctcggggcattgctggggagggatgcggtggcgctggcgctggc
GGAGAT
- GAGATG
- - - - GAGAGG
- - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcgctg