1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGGAGATCGACCGGGCGGTGCGGGGGAGCAGCGACCGCCGCCTGCGGACCAAGTACGACAACGCCGTCTACGTCGTGCAGCGAGCCTTCGCGCTCTACCCgtacgcgccccccccctcctccccccctcccctctcactagattcgtgtggtagcggtgatggtggtggtggtgtcttagctcgatgatgatcaacgcga...
species | Oryza sativa |
transcript | LOC_Os01g15490.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGTACGACAACGCCGTCTACGTCGTGCAGCGAGCCTTCGCGCTCTACCC GTTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACAEST: gi|33676529|gb|CF304768.1|CF304768
genomic: AAGTACGACAACGCCGTCTACGTCGTGCAGCGAGCCTTCGCGCTCTACCCgtacgcgccc ... cattttccagGTTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACA
EST: ACGTCGTGCAGCGAGCCTTCGCGCTCTACCC GTTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACAEST: gi|33677366|gb|CF305605.1|CF305605
genomic: ACGTCGTGCAGCGAGCCTTCGCGCTCTACCCgtacgcgccc ... cattttccagGTTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACA
EST: GTGCAGCGAGCCTTCGCGCTCTACCC GTTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACA
genomic: GTGCAGCGAGCCTTCGCGCTCTACCCgtacgcgccc ... cattttccagGTTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGATCGACCGGGCGGTGCGGGGGAGCAGCGACCGCCGCCTGCGGACCAAGTACGACAACGCCGTCTACGTCGTGCAGCGAGCCTTCGCGCTCTACCCgtacgcgccccccccctcctccccccctcccctctcactagattcgtgtggtagcggtgatggtggtggtggtgtcttagctcgatgatgatcaacgcga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggtgg