1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGATTTATGCGATGGGCTTCTTGGCGTGCTTGTTCCCATGTCCTCAAGAGGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaattattctttttgttggaattcgttcttatgttcttgcaatcttgcttaaaaattggagtagaaatgtttggtgctgattggttagtgtca...
species | Oryza sativa |
transcript | LOC_Os01g15470.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCATAGAGTCAGCTCAG GATGTATCGAGTCTATCTTCATTAACAGTGGACGTGTTCTTTTCTTCCCTTEST: gi|58591917|gb|CF990225.1|CF990225
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tctctttcagGATGTATCGAGTCTATCTTCATTAACAGTGGACGTGTTCTTTTCTTCCCTT
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAG GATGTATCGAGTCTATCTTCATTAACAGTGGACGTGTTCTTTTCTTCCCTT
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tctctttcagGATGTATCGAGTCTATCTTCATTAACAGTGGACGTGTTCTTTTCTTCCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATTTATGCGATGGGCTTCTTGGCGTGCTTGTTCCCATGTCCTCAAGAGGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaattattctttttgttggaattcgttcttatgttcttgcaatcttgcttaaaaattggagtagaaatgtttggtgctgattggttagtgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA