1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGATTTATGCGATGGGCTTCTTGGCGTGCTTGTTCCCATGTCCTCAAGAGGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaattattctttttgttggaattcgttcttatgttcttgcaatcttgcttaaaaattggagtagaaatgtttggtgctgattggttagtgtca...
species | Oryza sativa |
transcript | LOC_Os01g15470.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAG TGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGAEST: gi|33679262|gb|CF307501.1|CF307501
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tcaataacagTGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGA
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAG TGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGAEST: gi|58665644|gb|CK054330.1|CK054330
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tcaataacagTGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGA
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAG TGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGAEST: gi|88351475|gb|CI627491.1|CI627491
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tcaataacagTGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGA
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAG TGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGAEST: gi|88727747|gb|CI749549.1|CI749549
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tcaataacagTGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGA
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAG TGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGAEST: gi|29656480|gb|CB652755.1|CB652755
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tcaataacagTGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGA
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAG TGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGAEST: gi|88410888|gb|CI578694.1|CI578694
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tcaataacagTGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGA
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAG TGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGAEST: gi|29634752|gb|CB639761.1|CB639761
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tcaataacagTGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGA
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAG TGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGAEST: gi|58692998|gb|CK081685.1|CK081685
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tcaataacagTGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGA
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAG TGGAATATTCAAAGTTGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGAEST: gi|29634769|gb|CB639778.1|CB639778
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tcaataacagTGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGA
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAG TGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGAEST: gi|29633081|gb|CB638090.1|CB638090
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tcaataacagTGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGA
EST: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAG TGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGA
genomic: GGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaa ... tcaataacagTGGAATATTCAAAGTCGTCAGAGAGTTGCCCACTGAAGACTGAAGGGTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATTTATGCGATGGGCTTCTTGGCGTGCTTGTTCCCATGTCCTCAAGAGGTGAGAGATGAGGATGAGGAACCAAGAAGCGGCCAGAGAGTCAGCTCAGgtggatttaattattctttttgttggaattcgttcttatgttcttgcaatcttgcttaaaaattggagtagaaatgtttggtgctgattggttagtgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA