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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCGGGGAGGAGGACTGTGTCTACTACCTCCGCACCGGCGCGTGCGGCTTCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAGgtgagtctcctaattcgcgcttcccttcccgatctggttcgttgcggcttgcgcgcgcgcgcgtgcgtggatgaggcagctctagggtggatggattaac...

Basic information

species Oryza sativa
transcript LOC_Os01g15460.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g15460.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G036837_T03 (Zea mays), 5'ss of exon 2
GCCCGGGGAGGAGGACTGTGTCTACTACCTCCGCACCGGCGCGTGCGGCTTCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAGgtgagtctcctaattcgcgcttcccttcccgatctggttcgttgcggcttgcgcgcgcgcgcgtgcgtgga-tgaggcagctctagggtggatggattaac-
||| || |||| |||||||| ||||||||||||||| ||||| ||||||||||| || || |||||||||||||| || |||||||| ||||||||||||||| |    |       || ||  || |    |||| |||       |||||   | |   | | |  |   |||  |   ||   |   ||     |    
GCCTGGCGAGGCGGACTGTGGCTACTACCTCCGCACGGGCGCCTGCGGCTTCGGGGAGCGTTGCCGCTACAACCATCCCCGCGATCGTGGCGGCACTGAGgtgcgcg--cgggcggacgattttctccagcctctgcttcccgctctcttgctttctcaatcttccccgatctgatccgtgtccgcgtccgacacgctgctg

upper sequence: LOC_Os01g15460.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G086994_T02 (Zea mays), 5'ss of exon 2
GCCCGGGGAGGAGGACTGTGTCTACTACCTCCGCACCGGCGCGTGCGGCTTCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAGgtgagt------ctcctaattcgcgcttcccttcccgatctggttcgttgcggcttgcgcgc-gcgcgcgtgcgtggatgaggcagctctagggtggatggattaac
||| || |||| |||||||| ||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||       |  | |     |    | || ||||||||| | |||  | || | || || ||  ||     | |  ||    | ||      || | |      
GCCTGGCGAGGCGGACTGTGGCTACTACCTCCGCACGGGCGCCTGCGGCTTCGGGGAGCGCTGCCGCTACAACCACCCTCGCGATCGTGGCGGCACTGAGgtgagcgcgtcgcgtccagaagccttcactctccccgatctgatccgtgtccgcgtccgagctgcttgctgctatcggcgaa-ttgttccgtttcgggtag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88572959|gb|CI664530.1|CI664530
EST:     TCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAG                         TTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCG
genomic: TCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAGgtgagtctcc ... caaaatgtagTTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCG
EST: gi|88306285|gb|CI636670.1|CI636670
EST:     TCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAG                         TTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCG
genomic: TCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAGgtgagtctcc ... caaaatgtagTTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCG
EST: gi|88306241|gb|CI636626.1|CI636626
EST:     TCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAG                         TTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCG
genomic: TCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAGgtgagtctcc ... caaaatgtagTTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCG