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CGAGCGAGCGAGAGAGAGGGGAGAAGAAGAGGTGGGACAGCCGGGAGATCCATCCCTGTGGAGAGGAGGGAGGGAGGAAGGAGGCGTTGGAGGAGGAGAGgtgcgttgcggtttgttcgttcttgctgcttcgatttggtttgcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt...
species | Oryza sativa |
transcript | LOC_Os01g14860.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAGGCG-TGGAGGAGGAGAG GTTGACCGATAGATCCATTGCGGAGTTGAGTGTTGATGCAAAGCTGATTCGEST: gi|58665103|gb|CK053789.1|CK053789
genomic: GGAGGCGTTGGAGGAGGAGAGgtgcgttgcg ... gatctcgcagGTTGACCGATAGATCCATTGCGGAGTTGAGTGTTGATGCAAAGCTGATTCG
EST: GAGG-GTTGGAGGAGGAGAG GTTGACCGATAGATCCATTGCGGAGTTGAGTGTTGATGCAAAGCTGATTCGEST: gi|29687086|gb|CB683361.1|CB683361
genomic: GAGGCGTTGGAGGAGGAGAGgtgcgttgcg ... gatctcgcagGTTGACCGATAGATCCATTGCGGAGTTGAGTGTTGATGCAAAGCTGATTCG
EST: AGGCGTTGGAGGACCTGAG GTTGACCGATAGATCCATTGCGGAGTTGAGTGTTGATGCAAAGCTGATTCGEST: gi|58664372|gb|CK053058.1|CK053058
genomic: AGGCGTTGGAGGAGGAGAGgtgcgttgcg ... gatctcgcagGTTGACCGATAGATCCATTGCGGAGTTGAGTGTTGATGCAAAGCTGATTCG
EST: GAGGGAGGAAGGAGGCGTTGGAGGAGGAGAG GTTGACCGATAGATCCATTGCGGAGTTGAGTGTTGATGCAAAGCTGATTCG
genomic: GAGGGAGGAAGGAGGCGTTGGAGGAGGAGAGgtgcgttgcg ... gatctcgcagGTTGACCGATAGATCCATTGCGGAGTTGAGTGTTGATGCAAAGCTGATTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGCGAGCGAGAGAGAGGGGAGAAGAAGAGGTGGGACAGCCGGGAGATCCATCCCTGTGGAGAGGAGGGAGGGAGGAAGGAGGCGTTGGAGGAGGAGAGgtgcgttgcggtttgttcgttcttgctgcttcgatttggtttgcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA