1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTACCACATCGGCATCGTGCTGGCCGCGCTGTGGGCCGCGGGCTCCCTCGGCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATGgtacggtgctcttctgccgctgccgcccgcgcctctcgctgataagttgatgcgacttttttttttatcttttttgagctcctttacggcatatgcttag...
species | Oryza sativa |
transcript | LOC_Os01g14050.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATG GTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAAEST: gi|88367814|gb|CI570553.1|CI570553
genomic: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATGgtacggtgct ... ttcattgtagGTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAA
EST: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATG GTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAAEST: gi|88763700|gb|CI773119.1|CI773119
genomic: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATGgtacggtgct ... ttcattgtagGTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAA
EST: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATG GTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAAEST: gi|88734354|gb|CI757862.1|CI757862
genomic: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATGgtacggtgct ... ttcattgtagGTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAA
EST: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATG GTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAAEST: gi|88694531|gb|CI738569.1|CI738569
genomic: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATGgtacggtgct ... ttcattgtagGTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAA
EST: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATG GTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAAEST: gi|88449626|gb|CI579906.1|CI579906
genomic: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATGgtacggtgct ... ttcattgtagGTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAA
EST: CTTCCGCCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTAAATG GTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAAAATGAAGAAEST: gi|88358378|gb|CI606887.1|CI606887
genomic: CTTCCGCC-ACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATGgtacggtgct ... ttcattgtagGTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAA
EST: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATG GTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAAEST: gi|88410896|gb|CI578702.1|CI578702
genomic: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATGgtacggtgct ... ttcattgtagGTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAA
EST: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATG GTAAATGCTCGCTGTGCAATGAAATTGGGGAAGAGAATACAACATGAAGAA
genomic: GCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATGgtacggtgct ... ttcattgtagGTAAATGCTCGCTGTGCAATGAAATTGCGGAAGAGAATACAACATGAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCACATCGGCATCGTGCTGGCCGCGCTGTGGGCCGCGGGCTCCCTCGGCTTCCGCCACTCCGTCCTCTTCCTCCTCGCCTTCCTCTACCTCTACATGgtacggtgctcttctgccgctgccgcccgcgcctctcgctgataagttgatgcgacttttttttttatcttttttgagctcctttacggcatatgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC