1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGCCGCCATGAAGTCGTACAGGCTGTCGGAGCTCAGCGACGCCGAGGTCGGCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagatagagacgagatggagagagagagagagagagagagagagcgagctacactagccgtggtcactgcgtgaatttgtgattgattgtctctcaaccattgggcttagtcttttttttcttttttttgggtgcgagtag
species | Oryza sativa |
transcript | LOC_Os01g13190.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|29680232|gb|CB676507.1|CB676507
genomic: CCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|88449248|gb|CI582120.1|CI582120
genomic: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|88724368|gb|CI747627.1|CI747627
genomic: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|88387313|gb|CI580658.1|CI580658
genomic: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|88339460|gb|CI635438.1|CI635438
genomic: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|117232645|gb|CT842234.1|CT842234
genomic: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|88298841|gb|CI566038.1|CI566038
genomic: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|58673757|gb|CK062443.1|CK062443
genomic: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAA--CGA-TGTTGAAGCCGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|88392984|gb|CI614866.1|CI614866
genomic: GCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|29683233|gb|CB679508.1|CB679508
genomic: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGCGCCCCCGCATCCTCTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|29662201|gb|CB658476.1|CB658476
genomic: GCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|86906628|gb|CI291123.1|CI291123
genomic: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCEST: gi|88388089|gb|CI590365.1|CI590365
genomic: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGC
EST: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAGEST: gi|88721621|gb|CI744920.1|CI744920
genomic: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
EST: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACG GTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
genomic: GCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagataga ... gtgcgagtagGTCAATCCGATTGTTGAAGACGTGCGCATGCGAGGCGATGCTGCGGTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGCCATGAAGTCGTACAGGCTGTCGGAGCTCAGCGACGCCGAGGTCGGCGGCCTCAAGGCGCGCCCCCGCATCGACTTCTCCTCCATTTTCGGCACGgtgagatagagacgagatggagagagagagagagagagagagagagcgagctacactagccgtggtcactgcgtgaatttgtgattgattgtctctcaaccattgggcttagtcttttttttcttttttttgggtgcgagtag
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