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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGACTACCTCGCCACGGCGCGGCTGCCGTACGGGATGACGTACTTCGGGTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGgtacgaacgggcacacaacccatttctcctctccgaggtgatcgatcgatcgatatgccgggttgacctgacatttttctgcgtgttttgtgatgatgagcag

Basic information

species Oryza sativa
transcript LOC_Os01g11650.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29679644|gb|CB675919.1|CB675919
EST:     GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCG                         CGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
genomic: GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGgtacgaacgg ... tgatgagcagCGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
EST: gi|29613920|gb|CB618933.1|CB618933
EST:     GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCG                         CGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
genomic: GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGgtacgaacgg ... tgatgagcagCGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
EST: gi|58687715|gb|CK076402.1|CK076402
EST:     GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCG                         CGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
genomic: GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGgtacgaacgg ... tgatgagcagCGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
EST: gi|29638553|gb|CB643562.1|CB643562
EST:     GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCG                         CGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
genomic: GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGgtacgaacgg ... tgatgagcagCGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
EST: gi|117238603|gb|CT842448.1|CT842448
EST:     GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCG                         CGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
genomic: GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGgtacgaacgg ... tgatgagcagCGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
EST: gi|25802817|gb|CA758778.1|CA758778
EST:     GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCG                         CGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
genomic: GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGgtacgaacgg ... tgatgagcagCGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
EST: gi|29669794|gb|CB666069.1|CB666069
EST:     GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCG                         CGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA
genomic: GTACCCCACCGGGCGTTGCTCCGACGGCCGCCTCGTCGTCGACTTCATCGgtacgaacgg ... tgatgagcagCGCAGGAGGTGGGGTTGCCGCTGCTGCCGCCGTCGAAGGCGAAGAACGCGA