1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
GGAGGCCGGGGTCGGAGAAGCCGACGGCGGCGATCGTCGAGGACGAGGAGGGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctcccccaaaccctaaactaaaccccccctcttccctctcgcattgtcgcgcgcgctactcgcggtttctgaaggtgtggctgctcaccgctgctctcgccgcggttggttttag
species | Oryza sativa |
transcript | LOC_Os01g11370.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|88362444|gb|CI623784.1|CI623784
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTTGGGTATGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCTGGTGTACEST: gi|88356674|gb|CI619160.1|CI619160
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagG-TTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCC-GGTGTAC
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|88388923|gb|CI592811.1|CI592811
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|58691453|gb|CK080140.1|CK080140
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|88312143|gb|CI580308.1|CI580308
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGGGGCTGCCGGTGTACAAEST: gi|88411265|gb|CI564386.1|CI564386
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|88727156|gb|CI750811.1|CI750811
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|88366515|gb|CI610734.1|CI610734
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|88730378|gb|CI753991.1|CI753991
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCANAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCCAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|29626953|gb|CB631964.1|CB631964
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|29636300|gb|CB641309.1|CB641309
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|88441713|gb|CI599618.1|CI599618
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|29624813|gb|CB629824.1|CB629824
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|88324258|gb|CI566071.1|CI566071
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|88726049|gb|CI749704.1|CI749704
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|88693453|gb|CI737028.1|CI737028
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|88430331|gb|CI567350.1|CI567350
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAAEST: gi|88430530|gb|CI569553.1|CI569553
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
EST: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGG GTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
genomic: GGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctccccc ... ttggttttagGTTTGGGTACGCGAGCTTGGAGCGGCAGCGGCAGCGGCTGCCGGTGTACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCCGGGGTCGGAGAAGCCGACGGCGGCGATCGTCGAGGACGAGGAGGGCGGCGTCCTCTTCCTGCCCACAAGCACCAGCTCCTCCTCCTCATCCGGgtgctcccccaaaccctaaactaaaccccccctcttccctctcgcattgtcgcgcgcgctactcgcggtttctgaaggtgtggctgctcaccgctgctctcgccgcggttggttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC