1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCGCCAAGCACCACCCTCATGGCGGCCGCCGCCGCGGACCCGGCCCTGCTCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTGgtgagtgatagcggaaataatccccatcctgattagtacgactctatcgtctgatttcgcgttgtcttgctcttgcgaggctctaccgcgttacggcccg...
species | Oryza sativa |
transcript | LOC_Os01g10690.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTG ATTTCATACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAEST: gi|88731234|gb|CI754847.1|CI754847
genomic: TCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTGgtgagtgata ... tttttgacagATTTCATACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCA
EST: TCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTG ATTTCATACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAEST: gi|88717869|gb|CI739381.1|CI739381
genomic: TCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTGgtgagtgata ... tttttgacagATTTCATACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCA
EST: TCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTG ATTTCATACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAEST: gi|58687559|gb|CK076246.1|CK076246
genomic: TCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTGgtgagtgata ... tttttgacagATTTCATACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCA
EST: TCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTG ATTTCATACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAEST: gi|88725034|gb|CI748293.1|CI748293
genomic: TCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTGgtgagtgata ... tttttgacagATTTCATACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCA
EST: TCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTG ATTTCATACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCAEST: gi|88724862|gb|CI748121.1|CI748121
genomic: TCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTGgtgagtgata ... tttttgacagATTTCATACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCA
EST: TCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTG ATTTCATACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCA
genomic: TCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTGgtgagtgata ... tttttgacagATTTCATACAAATGGCTCAGCAGGAACTTCTCAGTATCATCCAATGATTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGCCAAGCACCACCCTCATGGCGGCCGCCGCCGCGGACCCGGCCCTGCTCGACCTGATTCCCCAGATCCACGCCCTCTTCGCCGATCCGCTCCGTGTGgtgagtgatagcggaaataatccccatcctgattagtacgactctatcgtctgatttcgcgttgtcttgctcttgcgaggctctaccgcgttacggcccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccatc