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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCCCCCGCCTCCCTCTCGTCGCCGGCGACCGCCGCCGCCGCCATGAGCCGCTTCGACGGCCGCGCCGCGGACCCCGGCTCGTACCGCGACCGCCGCAGgtaaccgctccaccaccgtggttttgatttctaaaccctaagccctaagtgttgggggttctgattgctcgttgggttgggttggggtttggttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g10050.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10050.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G143246_T01 (Zea mays), 5'ss of exon 1
CACCCCCCGCCTCCCTCTCGTCGCCGGCGACCGCCGCCGCCGCCATGAGCCGCTTCGACGGCCGCGCCGCGGACCCCGGCTCGTACCGCGACCGCCGCAGgtaaccgctc-caccaccgt--ggttttgatttctaaaccctaagccctaagtgttgggggttctgattgctcgttgggttgggttggggtttggttgcag
| ||     |||  |  || ||  || || | ||  |||||||||||||||||| |||||||||||| |||||| | ||||| |||||||||||||||||||||  |  | | |||| ||  || | | |  ||| |||||||||||||    |  ||  |    || ||   ||  | ||    | | |||   |  |||
CGCCTAAACCCTAGCCATCCTCCTCGCCGCCGGCGACCGCCGCCATGAGCCGCTACGACGGCCGCGCTGCGGACGCGGGCTCCTACCGCGACCGCCGCAGgtaattgaccgccccacggtcaggctctaaagtctgaaccctaagccctggccgc-ggccgacgcgagtgactgt--gcttccccttgtgttccatc-cag