1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CATGATAAGTCTCTCGATTGAAAATCTGAAATATTGTAGGATCGTGTGCTTATCTTGTTGGCCAAGCTTGCTGCATGTGTTAGACCTTCGTATATTACAGgtgcactctgtccaatgggtattcatatcctagagagattgcaaatgtctatggattgtacttactacagcattcatatttctattctaatgatgtttgtcccttcatttgtaccgtgcag
species | Oryza sativa |
transcript | LOC_Os01g09030.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCCAAGCTTGCTGCATGTGTTAGACCTTCGTATATTACAG ATAGCATTTCAGCGGCAGATGTCAGGCGAACTCGAAACATGTCATATTTCCEST: gi|27578223|gb|CB000918.1|CB000918
genomic: GGCCAAGCTTGCTGCATGTGTTAGACCTTCGTATATTACAGgtgcactctg ... taccgtgcagATAGCATTTCAGCGGCAGATGTCAGCCTAACTCGAAACATGTCATATTTCC
EST: TATCTTGTTGGCCAAGCTTGCTGCATGTGTTAGACCTTCGTATATTACAG ATAGCATTTCAGCGGCAGATGTCAGCCTAACTCGAAACATGTCATATTTCC
genomic: TATCTTGTTGGCCAAGCTTGCTGCATGTGTTAGACCTTCGTATATTACAGgtgcactctg ... taccgtgcagATAGCATTTCAGCGGCAGATGTCAGCCTAACTCGAAACATGTCATATTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGATAAGTCTCTCGATTGAAAATCTGAAATATTGTAGGATCGTGTGCTTATCTTGTTGGCCAAGCTTGCTGCATGTGTTAGACCTTCGTATATTACAGgtgcactctgtccaatgggtattcatatcctagagagattgcaaatgtctatggattgtacttactacagcattcatatttctattctaatgatgtttgtcccttcatttgtaccgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC