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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCGCGAAGGCGATTCAGGCGAGAAGAGAGAGAGAGAGCGCGAGGCCGGCGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacggcccacccttctcttcccaggtcgcgccgcgagttggatccgcgccaccgcccgcccgtggatctgatcgtgtttcggcgatttgttcgtt...

Basic information

species Oryza sativa
transcript LOC_Os01g08560.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29680265|gb|CB676540.1|CB676540
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|29680265|gb|CB676540.1|CB676540
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|29680265|gb|CB676540.1|CB676540
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|29680265|gb|CB676540.1|CB676540
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|29680265|gb|CB676540.1|CB676540
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88443569|gb|CI597036.1|CI597036
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88443569|gb|CI597036.1|CI597036
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88443569|gb|CI597036.1|CI597036
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88443569|gb|CI597036.1|CI597036
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88443569|gb|CI597036.1|CI597036
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88454101|gb|CI693642.1|CI693642
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: gi|88826135|gb|CI776700.1|CI776700
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88826135|gb|CI776700.1|CI776700
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88826135|gb|CI776700.1|CI776700
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88826135|gb|CI776700.1|CI776700
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88826135|gb|CI776700.1|CI776700
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88344861|gb|CI624512.1|CI624512
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88344861|gb|CI624512.1|CI624512
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88344861|gb|CI624512.1|CI624512
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88344861|gb|CI624512.1|CI624512
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88344861|gb|CI624512.1|CI624512
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88742162|gb|CI765670.1|CI765670
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88742162|gb|CI765670.1|CI765670
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88742162|gb|CI765670.1|CI765670
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88742162|gb|CI765670.1|CI765670
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88742162|gb|CI765670.1|CI765670
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88356810|gb|CI619296.1|CI619296
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88356810|gb|CI619296.1|CI619296
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88356810|gb|CI619296.1|CI619296
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88356810|gb|CI619296.1|CI619296
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88356810|gb|CI619296.1|CI619296
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88366431|gb|CI610726.1|CI610726
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88366431|gb|CI610726.1|CI610726
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88366431|gb|CI610726.1|CI610726
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88366431|gb|CI610726.1|CI610726
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88366431|gb|CI610726.1|CI610726
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88400214|gb|CI590904.1|CI590904
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88400214|gb|CI590904.1|CI590904
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88400214|gb|CI590904.1|CI590904
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88400214|gb|CI590904.1|CI590904
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88400214|gb|CI590904.1|CI590904
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58653851|gb|CK042531.1|CK042531
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58653851|gb|CK042531.1|CK042531
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58653851|gb|CK042531.1|CK042531
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58653851|gb|CK042531.1|CK042531
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58653851|gb|CK042531.1|CK042531
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88356212|gb|CI627660.1|CI627660
EST:     CGGTTCTACAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88356212|gb|CI627660.1|CI627660
EST:     CGGTTCTACAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88356212|gb|CI627660.1|CI627660
EST:     CGGTTCTACAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88356212|gb|CI627660.1|CI627660
EST:     CGGTTCTACAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88356212|gb|CI627660.1|CI627660
EST:     CGGTTCTACAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58664216|gb|CK052902.1|CK052902
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58664216|gb|CK052902.1|CK052902
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58664216|gb|CK052902.1|CK052902
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58664216|gb|CK052902.1|CK052902
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58664216|gb|CK052902.1|CK052902
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88377659|gb|CI605494.1|CI605494
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88377659|gb|CI605494.1|CI605494
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88377659|gb|CI605494.1|CI605494
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88377659|gb|CI605494.1|CI605494
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88377659|gb|CI605494.1|CI605494
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88424653|gb|CI606452.1|CI606452
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88424653|gb|CI606452.1|CI606452
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88424653|gb|CI606452.1|CI606452
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88424653|gb|CI606452.1|CI606452
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|88424653|gb|CI606452.1|CI606452
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|29678338|gb|CB674613.1|CB674613
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|29678338|gb|CB674613.1|CB674613
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|29678338|gb|CB674613.1|CB674613
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|29678338|gb|CB674613.1|CB674613
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|29678338|gb|CB674613.1|CB674613
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58689129|gb|CK077816.1|CK077816
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58689129|gb|CK077816.1|CK077816
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58689129|gb|CK077816.1|CK077816
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58689129|gb|CK077816.1|CK077816
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-
EST: gi|58689129|gb|CK077816.1|CK077816
EST:     CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC                         G
genomic: CGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacgg ... atgtgcgcag-

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCGCGAAGGCGATTCAGGCGAGAAGAGAGAGAGAGAGCGCGAGGCCGGCGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCgtaggtacggcccacccttctcttcccaggtcgcgccgcgagttggatccgcgccaccgcccgcccgtggatctgatcgtgtttcggcgatttgttcgtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgccc