1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCGAAGGCGATTCAGGCGAGAAGAGAGAGAGAGAGCGCGAGGCCGGCGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggcccacccttctcttcccaggtcgcgccgcgagttggatccgcgccaccgcccgcccgtggatctgatcgtgtttcggcgatttgttcgttgcgt...
species | Oryza sativa |
transcript | LOC_Os01g08560.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88344861|gb|CI624512.1|CI624512
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|29680265|gb|CB676540.1|CB676540
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88826135|gb|CI776700.1|CI776700
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|58664216|gb|CK052902.1|CK052902
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88400214|gb|CI590904.1|CI590904
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|58689129|gb|CK077816.1|CK077816
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88454101|gb|CI693642.1|CI693642
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC---- GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88328439|gb|CI676644.1|CI676644
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC---- GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88366431|gb|CI610726.1|CI610726
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88361642|gb|CI680209.1|CI680209
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCC---- GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|58662624|gb|CK051310.1|CK051310
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG TEST: gi|58662624|gb|CK051310.1|CK051310
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcag-
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG TEST: gi|29678338|gb|CB674613.1|CB674613
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcag-
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88742162|gb|CI765670.1|CI765670
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88377659|gb|CI605494.1|CI605494
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88354443|gb|CI624833.1|CI624833
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGACAAGATEST: gi|88443569|gb|CI597036.1|CI597036
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88424653|gb|CI606452.1|CI606452
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88356212|gb|CI627660.1|CI627660
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTACAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|88406030|gb|CI591425.1|CI591425
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGGGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|58653851|gb|CK042531.1|CK042531
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAG GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGATEST: gi|58673971|gb|CK062657.1|CK062657
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
EST: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAT GAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
genomic: TCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggccca ... atgtgcgcagGAGCTGTTCATTAGATCTGAATAAGGGGGATTGAAGCAGTGAGGAGAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGAAGGCGATTCAGGCGAGAAGAGAGAGAGAGAGCGCGAGGCCGGCGGTTCTAGAAGCTTCCAGACCCTTCGGCGCGAGCGAGCTCACCTCCCCCGTAGgtacggcccacccttctcttcccaggtcgcgccgcgagttggatccgcgccaccgcccgcccgtggatctgatcgtgtttcggcgatttgttcgttgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgccc