1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGTCGTCGCCGCCGTCCGACCGTAGGCCGCTCCACTTCGCGGCGTTCCTGCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtaccagcatctttttcctccgctttcctcctagccatcgcagctcacctcacggtttcttgcgtgcttgcttcgattctgcag
species | Oryza sativa |
transcript | LOC_Os01g07720.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|88740960|gb|CI764468.1|CI764468
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|88765491|gb|CI774585.1|CI774585
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|88734598|gb|CI758106.1|CI758106
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|88312323|gb|CI582661.1|CI582661
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|88576279|gb|CI670424.1|CI670424
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|88309854|gb|CI656988.1|CI656988
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|88763364|gb|CI772825.1|CI772825
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|88592824|gb|CI710953.1|CI710953
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|88449328|gb|CI582200.1|CI582200
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|88327935|gb|CI648334.1|CI648334
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|88763578|gb|CI773025.1|CI773025
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|88741433|gb|CI764941.1|CI764941
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATGGCTCAGEST: gi|87008978|gb|CI304921.1|CI304921
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGT ATACCAAGATCGACTGGGACGCGTACATAGCTCAGEST: gi|88337341|gb|CI629631.1|CI629631
genomic: GCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagATACCAAGATCGACTGGGACGCGTACATGGCTCAG
EST: CTGCTCGCCGACGCGGCGCCTCGTCGCC-TCATCGTCGTCTTCGTCCCGT ATTAC-AAGATCGACTGGGACGCGTACATGGCTCAG
genomic: CTGCTCGCCGACGCGGCGC-TCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtacca ... gattctgcagAT-ACCAAGATCGACTGGGACGCGTACATGGCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTCGTCGCCGCCGTCCGACCGTAGGCCGCTCCACTTCGCGGCGTTCCTGCTGCTCGCCGACGCGGCGCTCGTCGCCCTCATCGTCGTCTTCGTCCCGTgtgcgtaccagcatctttttcctccgctttcctcctagccatcgcagctcacctcacggtttcttgcgtgcttgcttcgattctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT