Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGACGGTGCCGTTCCATGGCAAGGATGAGCTGCGCAGGTACAGGAAGATCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAGgcaatttcttcttcttcttcttcttcttcttcttcttctttgcttctctcactagctagcttgctaggagtagctgagctgatggtgctgtggtgtttgtgtgcatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g07570.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58667839|gb|CK056525.1|CK056525
EST:     TCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAG                         AGCCCCGACGGCGATGTCATCGACTGCGTGCCGGCGCGCCTGCAGCCGGCG
genomic: TCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAGgcaatttctt ... gtgcatgcagAGCCCCGACGGCGATGTCATCGACTGCGTGCCGGCGCACCTGCAGCCGGCG
EST: gi|58659351|gb|CK048031.1|CK048031
EST:     TCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAG                         AGCCCCGACGGCGATGTCATCGACTGCGTGCCGGCGCGCCTGCAGCCGGCG
genomic: TCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAGgcaatttctt ... gtgcatgcagAGCCCCGACGGCGATGTCATCGACTGCGTGCCGGCGCACCTGCAGCCGGCG
EST: gi|12622786|gb|AU172999.1|AU172999
EST:     TCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAG                         AGCCCCGACGGCGATGTCATCGACTGCGTGCCGGCGCACCTGCAGCCCGGC
genomic: TCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAGgcaatttctt ... gtgcatgcagAGCCCCGACGGCGATGTCATCGACTGCGTGCCGGCGCACCTGCAGCC-GGC
EST: gi|88327518|gb|CI646705.1|CI646705
EST:     TCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGAAGATCCAG                         AGCCCCGACGGCGATGTCATCGACTGCGTGCCGGCGCACCTGCAGCCGGCG
genomic: TCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAGgcaatttctt ... gtgcatgcagAGCCCCGACGGCGATGTCATCGACTGCGTGCCGGCGCACCTGCAGCCGGCG
EST: gi|58656944|gb|CK045624.1|CK045624
EST:     TCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAG                         AACCCCGACGGGGATGTCATCGACTG
genomic: TCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAGgcaatttctt ... gtgcatgcagAGCCCCGACGGCGATGTCATCGACTG
EST: gi|58657840|gb|CK046520.1|CK046520
EST:     TCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAG                         AGCCCCGACGGCGATGTCATCGACTGCGTGCCGGCGCGCCTGCAGCCGGCG
genomic: TCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAGgcaatttctt ... gtgcatgcagAGCCCCGACGGCGATGTCATCGACTGCGTGCCGGCGCACCTGCAGCCGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGACGGTGCCGTTCCATGGCAAGGATGAGCTGCGCAGGTACAGGAAGATCATGGCGCAGGTTGCCAGGTTGAAGAAGGCTTCTGTCAAGACGATCCAGgcaatttcttcttcttcttcttcttcttcttcttcttctttgcttctctcactagctagcttgctaggagtagctgagctgatggtgctgtggtgtttgtgtgcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG