1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATTCTCTGTTTCTGTACACATGAAGGTGAAACGTGAAGAGTTGCTTCAGTTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataaatctactaacaagcatctagactcttattgggggagaaagggggggggggtcctatgcatttatttaggaatttatatacttcttgtggacaatttgaaacttaaatacttttgttactctaatatgtttatgtcgcttcagaatag
species | Oryza sativa |
transcript | LOC_Os01g06270.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAG ATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAEST: gi|88593663|gb|CI713617.1|CI713617
genomic: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataa ... ttcagaatagATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
EST: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAG ATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAEST: gi|88675253|gb|CI727368.1|CI727368
genomic: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataa ... ttcagaatagATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
EST: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAG ATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAEST: gi|88972621|gb|CI717347.1|CI717347
genomic: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataa ... ttcagaatagATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
EST: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAG ATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAEST: gi|88670454|gb|CI724570.1|CI724570
genomic: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataa ... ttcagaatagATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
EST: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAG ATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAEST: gi|88959466|gb|CI716835.1|CI716835
genomic: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataa ... ttcagaatagATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
EST: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAG ATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAEST: gi|88595334|gb|CI714155.1|CI714155
genomic: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataa ... ttcagaatagATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
EST: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAG ATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAEST: gi|88670097|gb|CI724213.1|CI724213
genomic: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataa ... ttcagaatagATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
EST: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAG ATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAEST: gi|88669723|gb|CI723839.1|CI723839
genomic: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataa ... ttcagaatagATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
EST: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAG ATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAEST: gi|88687953|gb|CI731529.1|CI731529
genomic: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataa ... ttcagaatagATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
EST: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAG ATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAEST: gi|88905475|gb|CI712774.1|CI712774
genomic: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataa ... ttcagaatagATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
EST: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAG ATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAAEST: gi|88593918|gb|CI713872.1|CI713872
genomic: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataa ... ttcagaatagATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
EST: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAG ATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
genomic: TTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataa ... ttcagaatagATGCTGAAGCTGTAGAGTTGTGGAAGAAACTAAATGAGAAGGAGACATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCTCTGTTTCTGTACACATGAAGGTGAAACGTGAAGAGTTGCTTCAGTTTACCCAAAGTGCCATTTCTGGACTAAAGAGGAATTCTGACATTATGAGgtagttataaatctactaacaagcatctagactcttattgggggagaaagggggggggggtcctatgcatttatttaggaatttatatacttcttgtggacaatttgaaacttaaatacttttgttactctaatatgtttatgtcgcttcagaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA