Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTCCCCCCCCCCCCCCCCCCCCCCGCGTCCAGTTCCATCTAATCAGCTTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttttctcttcctgcttgaaatctctagtcgcatgttcttgtgtctcggtgactcaggagaatttttgatttttttttctgttctggaacgcga...

Basic information

species Oryza sativa
transcript LOC_Os01g05490.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G018177_T01 (Zea mays), 5'ss of exon 1
CTCTTCCCCCCCCCCCCCCCCCCCCCCGCGTCCAGTTCCA-TCTAATCAGCTTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttttctcttcctgcttgaaatctctagtcgcatgttct---tgtgtctcggtgactcaggagaatttttgatttttttttctgttctggaacgcga
 | |     | |||  || || | ||| | |||    ||| |||||||  |  |  | |||||||||||||||||||||||||||||||||||||||||||||||||| | |  |  |    | ||| |  ||| |    | |  |   || |    ||    |  | || || | ||||    ||| | |||  |  | ||  
-TTTAGAAGCGCCCTTCCTCCTCTCCCCCATCCGTACCCAATCTAATCGACACCCGGCCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttctcttcccccg---tcgaactgcctatttttctttcgtggatgggatgtggacctttggtagtatatctgatcccgtttacggttaagctaggcag

upper sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G030784_T02 (Zea mays), 5'ss of exon 3
CTCTTCCCCCCCCCCCCCCCCCCCCCCGCGTCCAGTTCCATCTAATCAGCTTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaattttt-ttctcttcctgcttgaaatctctag-tcgcatgttcttgtgtctcggtgactcaggagaatttttgatttttttttctgttctggaacgcga--
           | ||  ||    | ||||  ||    | ||||||||  |  |||  |||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| | || ||  |   || |   | || ||| ||  ||  || || |  |   ||  |   |    ||||  | |||||  |           
---------TTCGCCGTCCGAAGCTCCGCACCC----CAATCTAATCGACACCTCACCGAGATGGGCCGCAAGTTCTTCGTCGGTGGCAACTGGAAATGCgtaatttctcttcccctcgtggatcggatgtggggctctcatatttctg-atcccgtttgc---ggctaggctagtgttttactctctgtgatacggtatagat

upper sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G030784_T01 (Zea mays), 5'ss of exon 1
CTCTTCCCCCCCCCCCCCCCCCCCCCCGCGTC-CAGTTCCATCTAATCAGCTTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaattttt-ttctcttcctgcttgaaatctctag-tcgcatgttcttgtgtctcggtgactcaggagaatttttgatttttttttctgttctggaacgcga--
  | || | | | |  | ||  ||   ||  | ||   | ||||||||  |  |||  |||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| | || ||  |   || |   | || ||| ||  ||  || || |  |   ||  |   |    ||||  | |||||  |           
-CCCTCTCTCTCTCTTCGCCGTCCGAAGCTCCGCACCCCAATCTAATCGACACCTCACCGAGATGGGCCGCAAGTTCTTCGTCGGTGGCAACTGGAAATGCgtaatttctcttcccctcgtggatcggatgtggggctctcatatttctg-atcccgtttgc---ggctaggctagtgttttactctctgtgatacggtatagat

upper sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G018177_T02 (Zea mays), 5'ss of exon 1
CTCTTCCCCCCCCCCCCCCCCCCCCCCGCGTCCAGTTCCATCTAATCAGCTTCTCGTCG--AGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCg-taattttttt----ctcttcctgcttgaaatctctagtcgcatgttcttgtgtct--cggtgactcaggagaatttttgatttttttttctgttctggaacgcga
   |   || |     |  |       ||  |  |       ||||     |  |  ||    |  | |      |  ||||| | ||| |  ||||  |  | || | | | |    |  ||   | || |  |    |||    |||| |||| | |     ||  |  ||||    ||||  ||   ||   | ||||||      
---TGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCGTAATTTCTCTTCCCCCGTCGAACTGCCTATTTTTCTTTCGTGGATGGGATGTGGACCTTTGgtagtatatctgatcccgtttacggttaagctaggcagtgttttgtttttgtttttgtttttgtttggggagggggtttggattcgatt---gctctggattc---

upper sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S3_334V6.1 (Physcomitrella patens), 5'ss of exon 1
-CTCTTCCCCCCCCCCCCCCCCCCCCCCGCGTCCAGTTCCATCTAATCAGCTTCTCGTCGAGATGGGC-CGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgt-aatttttttctcttcctgcttgaaatctctagtcgcatgttcttgtgtctcggtgactcaggagaatttttgattttt---ttttctgttctggaacgcga
   |    | ||       ||  ||| |   ||||||    | |   ||| ||   |  ||  ||  | || ||||| |||||||||||||||||||||||||| | | ||  | ||  | | |||   ||   |  | |  |    || |  |   ||||  |||   | |  |  ||||||   | ||| ||| ||  |     
CTACCCGTCACCGATTTGACCATCCCGCTTCTCCAGTGTGGTTTCCGCAGGTTTCAG--GATGTGTTCGCGGAAGTTTTTCGTTGGTGGCAACTGGAAATGCgtcagtcttcatgtccccttcctt---attgatgatagacttcattttttccattgtgag-cagagtattcatgaatttttgtatcttcggttgtgagaatttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9884572|gb|BE607405.1|BE607405
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|88428457|gb|CI564925.1|CI564925
EST:     TTCTCGTCGAGATGGGCCGGAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|88329671|gb|CI650137.1|CI650137
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|33809280|gb|CF330521.1|CF330521
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|163920975|gb|EG710112.1|EG710112
EST:     CAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: CAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|33807203|gb|CF329482.1|CF329482
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|396941501|gb|HO188710.1|HO188710
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGTACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|55432246|gb|CV729143.1|CV729143
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AATGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|163917779|gb|EG711301.1|EG711301
EST:     CGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: CGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|14981165|gb|BI305843.1|BI305843
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AATGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|33685619|gb|CF313858.1|CF313858
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|88582134|gb|CI699369.1|CI699369
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|4715957|gb|AU057073.1|AU057073
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|11863261|gb|AU063171.2|AU063171
EST:     GTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: GTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|13420898|gb|AU174988.1|AU174988
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AATNGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|58604231|gb|CK014759.1|CK014759
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|12405253|gb|AU166854.1|AU166854
EST:     TTNTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTNTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|33687307|gb|CF315546.1|CF315546
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|88404380|gb|CI578257.1|CI578257
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|88586073|gb|CI703755.1|CI703755
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|27554111|gb|CA998011.1|CA998011
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AATGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|58686470|gb|CK075157.1|CK075157
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|38480889|gb|CF964978.1|CF964978
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|163929017|gb|EG709795.1|EG709795
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|88331636|gb|CI675981.1|CI675981
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|300215919|gb|HO088545.1|HO088545
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|319908632|gb|HS977760.1|HS977760
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AATGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|300216330|gb|HO088115.1|HO088115
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|33663593|gb|CF294560.1|CF294560
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|13896023|gb|AU182359.1|AU182359
EST:     TTNTCGTCGAGATGGGCCGNAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|38473212|gb|CF957344.1|CF957344
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|88433333|gb|CI591773.1|CI591773
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|163921200|gb|EG714125.1|EG714125
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|88592661|gb|CI710780.1|CI710780
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|218498238|gb|FG970096.1|FG970096
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|13806459|gb|AU181529.1|AU181529
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|33691197|gb|CF319436.1|CF319436
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|27554252|gb|CA998152.1|CA998152
EST:     CGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AATGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: CGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|33662374|gb|CF293341.1|CF293341
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|88372072|gb|CI641707.1|CI641707
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|33692821|gb|CF321060.1|CF321060
EST:     TTTTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|163927169|gb|EG715190.1|EG715190
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|88590954|gb|CI707857.1|CI707857
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
EST: gi|88338586|gb|CI645840.1|CI645840
EST:     TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGC                         AACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA
genomic: TTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttt ... gatgtaacagAACGGGACCACTGATCAGGTGGACAAAATTGTGAAAATTCTGAATGAGGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTTCCCCCCCCCCCCCCCCCCCCCCGCGTCCAGTTCCATCTAATCAGCTTCTCGTCGAGATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCgtaatttttttctcttcctgcttgaaatctctagtcgcatgttcttgtgtctcggtgactcaggagaatttttgatttttttttctgttctggaacgcga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG