Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAGATCAAGGACGAGATGGAGGAGGCGCCGCCGCTGCTGCTCGACGAGGCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGCgtaaggattattgacttttctctctctctctttcttggggttttgaggggtttcatagctggcctttgcacgcattcttgtccagatcgatgagtctgtt...

Basic information

species Oryza sativa
transcript LOC_Os01g04920.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g04920.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G477503_T01 (Zea mays), 5'ss of exon 1
CCGAGATCAAGGACGAGATGGAGGAGGCGCCGCCGCTGCTGCTCGACGAGGCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGCgtaaggattattg----acttttct------ctctctctctttcttggggttttgaggggtttcatagctggcctttgcacgcattcttgtccagatcgatgagtctgtt
  ||| ||||||| ||  |||||||||||||||||| | | || |||||||||  ||| || |||||||||||||||||||||||||||||||||||||||||||  |  | |    ||  | ||       |  |  | ||| ||   | |  | |   | |||  | |||   |||  |||| ||||| |  |||| |          
AGGAGGTCAAGGATGACCTGGAGGAGGCGCCGCCGCCGGTCCTGGACGAGGCCATGCGGCCGCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGCgtaagcctcctcgtcggaccctgctatgttgtttccatttttttttcttggtgcgggttttgtcagggttggttcttgtgcgcactcttggctggatcca----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58684663|gb|CK073350.1|CK073350
EST:     GCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGC                         TTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCG
genomic: GCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGCgtaaggatta ... atgtttgcagTTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCG
EST: gi|58668243|gb|CK056929.1|CK056929
EST:     GCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGC                         TTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCG
genomic: GCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGCgtaaggatta ... atgtttgcagTTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCG
EST: gi|4715717|gb|AU056833.1|AU056833
EST:     GCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGC                         TTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCG
genomic: GCCGCGCGCCCTCGCCGCGTCGCGCTCTTCGTCGAGCCGTCTCCGTTCGCgtaaggatta ... atgtttgcagTTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCG