Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGAATCTCCAATGCAGGTCCTGCTGCTGCCGCTGCTCGTCGCGGCGGCCGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcactcggatcagtgggaatggtttgctgaaattgagcttgagatggtagtaatggtgatgggtttggttttggttttgtgttcctcctccag

Basic information

species Oryza sativa
transcript LOC_Os01g04720.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g04720.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G022897_T01 (Zea mays), 5'ss of exon 1
----ACCGAATCTCCAATGCAGGTCCTGCTGCTGCCGCTGCTCGTCGCGGCGGCCGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctc------actcggatc----------------agtgggaatggttt-gctgaaattgagcttgagatggtagtaatggtgatgggt-ttggt----tttggttttgtgttcctcctccag------------
    |  | ||| |     ||     ||| |||||  | |||| ||  |     | ||| |  |||  |||||  |||| ||||||||||||||||||||||||||| || |       |||||  |                | |   | |  ||| | |  | | | |  ||  |||        |     | ||  |       | |||| |  |    |||  || |            
CGACAGGGGATCCCTCCCCCAA----TGCGGCTGCTCCCGCTCCTCCTGCTCCTCCTCGCCGGCGCCGGCGCCCGCGCCTCCGACGACCCCTTCCTCTCCGGCGgtaggcgctccctagctcggcccctcctcccccttacataatacaagttttttcgttcgattcgcggctgcaatgcagacggcgcgagcgagtgctaacgccgtgtggtctcctccgtctctccccgggccgggcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88412582|gb|CI690324.1|CI690324
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88444680|gb|CI694916.1|CI694916
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88582179|gb|CI699569.1|CI699569
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88583298|gb|CI700769.1|CI700769
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88588702|gb|CI706539.1|CI706539
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88580119|gb|CI692119.1|CI692119
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCANCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88304828|gb|CI671073.1|CI671073
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88388451|gb|CI683226.1|CI683226
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCANCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|95100667|gb|CI692375.1|CI692375
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88304886|gb|CI671133.1|CI671133
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88334552|gb|CI676330.1|CI676330
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88583373|gb|CI700849.1|CI700849
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88326784|gb|CI675485.1|CI675485
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88586547|gb|CI704251.1|CI704251
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|86902567|gb|CI304386.1|CI304386
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
EST: gi|88317510|gb|CI672086.1|CI672086
EST:     CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCG                         CGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG
genomic: CGTCGGCCTCGCGCGCGCCGCCGCCACCGACGACCCCTTCCTCTCCGGCGgtaagctcac ... cctcctccagCGCCGGGGAACCACAGCTACAACATCGACTGCGGCGGCGCGGCGGACTTCG