Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTCTCTCTCAAAAAAAAAGACTCGATCGAATGAAAAGAGGATTTTCTTCTTCTTCTTCCCCAATGAGCTCGTTGAGTTCTCGCTTCCATCGCTACTAGgtacgcaccacaaccattgcattcttttttcggtttttacagtcctggttattcagctcgtatgctaggcagttagggtttaggagcggtttaaactttaaagctgtcaataaaagtttttttttctctatctaattgtgcttttggatttag

Basic information

species Oryza sativa
transcript LOC_Os01g04660.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88585381|gb|CI703009.1|CI703009
EST:     GAGTTCTCGCTTCCATCGCTACTAG                         GGATTTGGAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTG
genomic: GAGTTCTCGCTTCCATCGCTACTAGgtacgcacca ... ttggatttagGGATTTGGAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTG
EST: gi|88587743|gb|CI704456.1|CI704456
EST:     GAGTTCTCGCTTCCATCGCTACTAG                         GGATTTGGAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTG
genomic: GAGTTCTCGCTTCCATCGCTACTAGgtacgcacca ... ttggatttagGGATTTGGAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTG
EST: gi|88580267|gb|CI697181.1|CI697181
EST:     GAGTTCTCGCTTCCATCGCTACTAG                         GGATTTGGAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTG
genomic: GAGTTCTCGCTTCCATCGCTACTAGgtacgcacca ... ttggatttagGGATTTGGAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTG
EST: gi|218479708|gb|FG950881.1|FG950881
EST:     CTTCTTCTTCCCCAATGAGCTCGTTGAGTTCTCGCTTCCATCGCTACTAG                         GGATTTGGATTACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTG
genomic: CTTCTTCTTCCCCAATGAGCTCGTTGAGTTCTCGCTTCCATCGCTACTAGgtacgcacca ... ttggatttagGGATTTGGAATACGCTGCGAATGCAATACTGATGTCTTGAAGAAAATTCTG