1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCGGGAGCCTCATCAGTTTGACATCCAAGAGCGAGATCAGGTACGAGGGCATCCTCTACAACATCAACACCGAGGAGTCCAGCATCGGCTTGCGCAATGgtattaattccatcccgccccccgcgcccgctccccctctcatttcctcagattcgcttgattcagcgctagatttggttcccccgtgaggtgaatctca...
species | Oryza sativa |
transcript | LOC_Os01g02090.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCTTGCGCAATG TTCGATCATTTGGAACCGAAGGGCGCAAGAAAGATGGAGTGCAAATTCCTGEST: gi|29638770|gb|CB643779.1|CB643779
genomic: GGCTTGCGCAATGgtattaattc ... tgttctctagTTCGATCATTTGGAACCGAAGGGCGCAAGAAAGATGGAGTGCAAATTCCTG
EST: GGCTTGCGCAATG CEST: gi|29638770|gb|CB643779.1|CB643779
genomic: GGCTTGCGCAATGgtattaattc ... tgttctctag-
EST: GGCTTGCGCAATG CEST: gi|29636683|gb|CB641692.1|CB641692
genomic: GGCTTGCGCAATGgtattaattc ... tgttctctag-
EST: GGCTTGCGCAATG TTCGATCATTTGGAACCGAAGGGCGCAAGAAAGATGGAGTGCAAATTCCTGEST: gi|58671766|gb|CK060452.1|CK060452
genomic: GGCTTGCGCAATGgtattaattc ... tgttctctagTTCGATCATTTGGAACCGAAGGGCGCAAGAAAGATGGAGTGCAAATTCCTG
EST: CATCCTCTACAACATCAACACCGAGGAGTCCAGCATCGGCTTGCGCAATG TTCGATCATTTGGAACCGAAGGGCGCAAGAAAGATGGAGTGCAAATTCCTG
genomic: CATCCTCTACAACATCAACACCGAGGAGTCCAGCATCGGCTTGCGCAATGgtattaattc ... tgttctctagTTCGATCATTTGGAACCGAAGGGCGCAAGAAAGATGGAGTGCAAATTCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGGGAGCCTCATCAGTTTGACATCCAAGAGCGAGATCAGGTACGAGGGCATCCTCTACAACATCAACACCGAGGAGTCCAGCATCGGCTTGCGCAATGgtattaattccatcccgccccccgcgcccgctccccctctcatttcctcagattcgcttgattcagcgctagatttggttcccccgtgaggtgaatctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG