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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAGGTACGAAGAACAGCGCAACATGCTCTACAACCAGACCTATAATCTCGACCAAGTCGCTTTCGCTGCCGATGGCCTCAAAGACGCTCAGCAGACCgtacgtactactccacatatatagcccgccttgtttgttcctactgtctccatgtctatgaattattgccgaaccattcttttgtttgttaatttatcgattcctcag

Basic information

species Oryza sativa
transcript LOC_Os01g01350.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01350.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G069827_T03 (Zea mays), 5'ss of exon 3
TTCAAGGTACGAAGAACAGCGCAACATGCTCTACAACCAGACCTATAATCTCGACCAAGTCGCTTTCGCTGCCGATGGCCTCAAAGACGCTCAGCAGACCgtacgtactactccacatatatagcccgccttgtttgttcctactgtctccatgtctatgaattattgccgaaccattcttttgtttgttaatttatcgattcctcag
      |||||| || || ||||||||| | |||||||| ||||| |||||||||||||| |  || ||||||||||||||||| || ||||||||||| |||   |   |   | || | |   |   |  |||  ||| ||   || | ||| | |||   | |    | |   || |||| |||  |  || || |         
------GTACGAGGAGCAACGCAACATGTTGTACAACCAAACCTACAATCTCGACCAAGTTGGCTTTGCTGCCGATGGCCTCAAGGATGCTCAGCAGACTgta---atgcccttaaatctctcatcgagcaagttcattcatat--tcacaatgcccatg---tctatatggagtgtttttttatttcctctttcatag---------